Research Updates Program Posters Advisory Papers Experience Notes Reports Peer Reviewed Publications (Journal chapters, Articles...) Working with Communities

The CRTR Program’s Phase One research effort has contributed to more than 630 research publications

showcasing research results and outputs from December 2004 to November 2009.  For details, see CRTR Research Compendium:

Phase One (2004–2009)

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Centre of Excellence - Australasia; Mesoamerica; East Africa; South East Asia
Working Groups - Bleaching; Connectivity; Disease; Modelling; Remote Sensing; Restoration

The following peer reviewed publications are produced by members of the CRTR Program through their involvement with the Program or through related research activities.

Publications are:
    i. attributed either directly to the CRTR Program; 
   ii. partially supported by the CRTR Program, or;
  iii. not supported directly by the Program however, the research has been influenced by the CRTR Program discussions,
       or the research has in turn influenced the CRTR Program’s research discussions

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All papers are listed on this one page to allow you to use the search feature of your browser.

 Bleaching ******

Year	Publicaton Type	Name of Article	Publication	Authors
2008	Book	Korallen als Ingenieure von Warm- und Kaltwasserriffen. Chapter 13.	In Leinfelder, R. Heiss, G. and Moldrzyk, U. (eds.) "abgetaucht"- Begleitbuch zur Sonderausstellung zum internationalen Jahr des Riffes 2008. Museum für Naturkunde der Humboldt-Universität, Berlin. Pp.171-181.	Wild, C. and Jantzen, C.
2008	Book	Konsequenzen des Klimawandels für Korallenriffe – mögliche Lösungsansätze. Chapter 12.	In Leinfelder, R. Heiss, G. and Moldrzyk, U. (eds.) "abgetaucht"- Begleitbuch zur Sonderausstellung zum internationalen Jahr des Riffes 2008. Museum für Naturkunde der Humboldt-Universität, Berlin. Pp.148-169.	Wild, C., Jantzen, C., Niggl, W., Haas, A., Mayer, F. and Naumann, M.
2008	Book	Consequences of coral bleaching for sessile reef organisms. Chapter 8.	In van Oppen, M. and Lough, J. M. (eds) Coral Bleaching: Patterns, Processes, Causes and Consequences. Ecological Studies. V.205. Springer: Berlin.	McClanahan, T. R., Weil, E., Cortes, J., Baird, A. and Ateweberhan, M.
2008	Book	Effects of climate-induced coral bleaching on coral-reef fishes: ecological and economic consequences.	In Gibson, R.N., Atkinson, R.J.A. and Gordon, J.D.M. (eds) Oceanography and Marine Biology: an Annual Review. v.46:251-296.	Pratchett, M. S., Munday, C. N., Wilson, S. K., Graham, N. A., Cinner, J. E., Bellwood, D. R., Jones, G. P., Polunin, N. V. C. and McClanahan, T. R.
2008	Conference Paper	Dynamic of the population size frequency distribution in 4 scleractinian coral species on Heron reef as a response to mild thermal stress.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [10.373]	Juan Carlos Ortiz and Glen Holmes
2008	Conference Paper	Managing fishing gear to encourage ecosystem-based management of coral reefs fisheries.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [22-17]	McClanahan, T. R., Cinner, J., Maina, J., Ruiz Sebastian, C., Wilson, S. and Graham, N.
2008	Conference Paper	Antioxidant activity of extracts and secondary metabolites from Pseudopterogorgia sps.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [9-16]	Mukherjee, M., West, L., Lasker, H., Schmidt, G. and Fitt, W.
2008	Conference Paper	Micro-niche partitioning and the photobiology of Symbiodinium associated with Montastraea faveolata.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [5.138]	Kemp, D., Hernandez-Pech, X., Iglesias-Prieto, R., Schmidt, G. and Fitt, W.
2008	Conference Paper	Bleaching, El Nino, and El Nina: 13 years of seasonal analysis of reef-building corals in Florida, the Bahamas, and the Caribbean.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [25-37]	Fitt, W., Kemp, D., Hernandez-Pech, X., Iglesias-Prieto, R., Thornhill, D., Bruns, B. and Schmidt,G.
2008	Conference Paper	Coral reef bleaching events, microbial communities and climate change.	‘Hot Topics’ symposium on Influence of climate change on disease and microbial environmental processes. Society for General Microbiology 162nd meeting, Edinburgh, 2 April 2008.	Bythell, J.C.
2008	Journal Article	Analytical approach for selecting normalizing genes from a cDNA microarray platform to be used in q-RT-PCR assays: A cnidarian case study.	Journal of Biochemical & Biophysical Methods. V.70(6)985-991.	Rodriguez-Lanetty, M., Phillips, W.S., Dove, S., Hoegh-Guldberg, O. and Weis, V.
2008	Journal Article	Genetic connectivity patterns of Pocillopora verrucosa in southern African Marine Protected Areas.	Marine Ecology. Progress Series. (MEPS). v.354:161-168.	Ridgway, T., Riginos, C., Davis, J. and Hoegh-Guldberg, O.
2008	Journal Article	Microbes enriched in seawater after addition of coral mucus.	Applied & Environmental Microbiology. v.74(10)3274-3278.	Allers, E., Niesner, C., Wild, C. and Pernthaler, J.
2008	Journal Article	Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii.	Biological Invasions. V.10:579-583.	Stat, M. and Gates, R. D
2008	Journal Article	Acclimatization in tropical reefs corals.	Marine Ecology. Progress Series. (MEPS). v.361:307-310.	Edmunds, P. J. and Gates, R. D
2008	Journal Article	Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef.	Limnology and Oceanography. v.53(5)1853-1861.	Manning, M. M. and Gates, R. D
2008	Journal Article	Functional diversity in coral-dinoflagellate symbiosis.	Proceedings of the National Academy of Science (PNAS). v.105(27)9256-9261.	Stat, M., Morris, E. and Gates, R. D.
2008	Journal Article	Ecological size-frequency distributions: how to prevent and correct biases in spatial sampling.	Limnology & Oceanography: Methods. V.6:144-152.	Zvuloni, A., Artzy-Randrup, Y., Stone, L., van Woesik, R. and Loya, Y.
2008	Journal Article	Bleaching increases likelihood of disease on Acropora palmata (Lamarck) in Hawksnest Bay, St. John, US Virgin Islands.	Coral Reefs. v.27(1)191-195.	Muller, E.M., Rogers, C.S., Spitzack, A.S. and van Woesik, R.
2008	Journal Article	Using three-dimensional surface area to compare the growth of two Pocilloporid coral species.	Marine Biology.v.155:421-427.	Holmes, G., Ortiz, J., Kaniewska, P. and Johnstone, R.
2008	Journal Article	Phototrophic adjustment of the foliaceous coral Echinopora lamellosa in Palau.	Estuarine, Coastal and Shelf Science. v.77(4)672-678.	Iwase A., Sakai, K. Suzuki, A. van Woesik, R.
2008	Journal Article	Local scale genetic structure in coral populations: A signature of selection.	Marine Pollution Bulletin. v.56:430-438	Zvuloni, A., Mokady, O., Al-Zibdah, M., Bernardi, G., Gaines, S.D. and Abelson, A.
2008	Journal Article	Structural deformation of branching corals associated with the vermetid gastropod Dendropoma maxima.	Marine Ecology. Progress Series. (MEPS). v.363:103-108.	Zvuloni, A., Armoza-Zvuloni, R. and Loya, Y.
2008	Journal Article	Dynamics of shallow-water assemblages in the Saipan Lagoon	Marine Ecology. Progress Series. (MEPS). v.356:39-50.	Houk, P. and van Woesik, R.
2008	Journal Article	Conservation action in a changing climate.	Conservation Letters. v.1:53-59.	McClanahan, T. R., Cinner, J. E., Maina, J., Graham, N. A. J., Daw T. M., Stead, S. M., Wamukota, A., Brown, K., Ateweberhan, M., Venus, V. and Polunin, N. V. C.
2008	Journal Article	Modelling susceptibility of coral reefs to environmental stress using remote sensing data and GIS models.	Ecological Modelling. V.212:180-199.	Maina, J., Venus, V., McClanahan, T. R. and Ateweberhan, M.
2008	Journal Article	Long-term changes in coral colony size distributions on Kenyan reefs under different management regimes and across the 1998 bleaching event.	Marine Biology. v.153:755-768.	McClanahan, T. R., Ateweberhan, M. and Omukoto, J.
2008	Journal Article	Meso-scale modelling of coral's susceptibility to environmental stress using remotely sensed data: Reply to comments by Dunne (2008).	Ecological Modelling. V.218:192-194.	Maina, J., McClanahan, T. R, and Venus, V.
2008	Journal Article	Specificity and stability in high latitude eastern Pacific coral-algal symbioses.	Limnology and Oceanography. v.53(2)719-727.	LaJeunesse, T.C., Reyes Bonilla, H., Warner, M.E., Wills, M., Schmidt, G.W. and Fitt, W.K.
2008	Journal Article	Correspondence between cold tolerance and temperate biogeography in Western Atlantic Symbiodinium (Dinophyta) lineage.	Journal of Phycology. v.44:1126-1135.	Thornhill, D.J., Kemp, D.W., Bruns, B.U., Fitt ,W.K. and Schmidt, G.W.
2008	Journal Article	Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians.	Proceedings of the National Academy of Science (PNAS). v.105(36)13674-13678.	Reynolds, J.C.M., Bruns, B.U., Fitt, W.K. and Schmidt, G.W.
2008	Journal Article	A precise and non-destructive method to calculate the surface area in living scleractinian corals using X-ray computed tomography and 3D modeling.	Coral Reefs. v.27:811-820.	Laforsch, C., Christoph, E,. Glaser, C., Naumann, M., Wild, C. and Niggl, W.
2008	Journal Article	Photosynthetic performance of giant clams, Tridacna maxima and T. squamosa, Red Sea.	Marine Biology. v.155(2)211-221.	Jantzen, C., Wild, C., el-Zibdah, M., Roa-Quiaoit, H.A., Haacke, C. and Richter, C.
2008	Journal Article	Biogeochemical responses following coral mass spawning on the Great Barrier Reef: pelagic-benthic coupling.	Coral Reefs. v.27(1)123-132.	Wild, C., Jantzen, C., Struck, U., Hoegh-Guldberg, O. and Huettel, M.
2008	Journal Article	High rates of nitrogen fixation (acetylene reduction) on coral skeletons following bleaching mortality.	Coral Reefs. v.27:227-236.	Davey, M., Holmes, G. and Johnstone, R.
2007	Book/Conference Paper	Coral reef texture classification using support vector machines.	In Ranchordas, A., Araujo, H. and Vitria, J. (eds) VISAPP 2007: Proceedings of 2nd International Conference on Computer Vision Theory and Applications, Barcelona, Spain. v. 2 pp302-310.	Mehta, A., Ribeiro, E., Gilner, J. and van Woesik, R.
2007	Book	Climate change and Australian marine life. Chapter 8.	Oceanography and Marine Biology: An Annual Review. v.45:407-478.	Poloczanska, E.S., Babcock, R., Butler, A., Hobday, A.J., Hoegh-Guldberg, O., Kunz, T.J. Matear, R., Milton, D.A., Okey, T.A. and Richardson, A.J.
2007	Journal Article	Coral reef bleaching and global climate change: Can corals survive the next century?	Proceedings of the National Academy of Science (PNAS). v.104(13)5259-5260.	Lesser, M. P.
2007	Journal Article	Bleaching, energetics and coral mortality risk: effects of temperature, light and sediment regime.	Limnology and Oceanography. v.52(2)716-726.	Anthony, K.R.N., Connolly, S.R. and Hoegh-Guldberg, O.
2007	Journal Article	Comment on "Modern-age buildup of CO2 and its effects on seawater acidity and salinity" by Hugo A. Loaiciga	Geophysical Research Letters. v.34:L18608.	Caldeira, K., Archer, D., Barry, J. P., Bellerby, R.G.J., Brewer, P.G., Cao, L., Dickson, A.G., Doney, S. C., Elderfield, H., Fabry, V. J., Feely, R. A., Gattuso, J.-P., Haugan, P.M., Hoegh-Guldberg, O., Jain, A. K., Kleypas, J. A., Langdon, C., Orr, J. C., Ridgwell, A., Sabine, C. L., Seibel, B. A., Shirayama, Y., Turley, C., Watson, A. and Zeebe, R. E.
2007	Journal Article	Predominance of clade D Symbiodinium in shallow-water reef-building corals off Kish and Larak Islands (Persian Gulf, Iran).	Marine Biology. v..153(1)25-34.	Mostafavi, P.G., Fatemi, S.M.R., Shahosseiny, M.H., Hoegh-Guldberg, O. and Loh, W.K.W.
2007	Journal Article	Acquisition of symbiotic dinoflagellates (Symbiodinium) by juveniles of the coral Acropora longicyathus.	Coral Reefs. v.27(1)219-226.	Gomez Cabrera, M. del C; Ortiz, J. C., Loh, W. K.W., Ward, S. and Hoegh-Guldberg, O.
2007	Journal Article	Phase shifts, herbivory and the resilience of coral reefs to climate change.	Current Biology. v.17(4)360-365.	Hughes, T.P., Rodriques, M J., Bellwood, D.R., Ceccarelli, D., Hoegh-Guldberg, O., McCook, L., Moltschaniwskyj, N. and Pratchet, M. S.
2007	Journal Article	Spring "bleaching" among Pocillopora in the Sea of Cortez, Eastern Pacific.	Coral Reefs. v.26(2)265-270.	LaJeunesse, T.C., Reyes-Bonilla, H. and Warner, M. E.
2007	Journal Article	Analysis of an EST library from the dinoflagellate (Symbiodinium sp.) symbiont of reef-building corals.	Journal of Phycology. v.43(5)1010-1021.	Leggat, W., Hoegh-Guldberg, O., Dove, S. and Yellowlees, D.
2007	Journal Article	Disease and cell death in White Syndrome of Acroporid corals on the Great Barrier Reef.	Marine Biology. v.151(1) 19-29.	Ainsworth, T.D., Kvennefors, E.C., Blackall, L., Fine, M. and Hoegh-Guldberg, O.
2007	Journal Article	Spatial heterogeneity of photosynthetic activity of dinoflagellate symbionts within diseased corals from the Great Barrier Reef.	Journal of Phycology. v.44(2)526-538.	Roff, G., Ulstrup, K. A., Fine, M., Ralph, P. J. and Hoegh-Guldberg, O.
2007	Journal Article	A world with corals: What will it take?	Science. v.318:5847.	Schuttenberg, H. and Hoegh-Guldberg, O.
2007	Journal Article	The effects of short-term exposures to ultraviolet radiation in the Hawaiian coral, Montipora verrucosa.	Journal of Experimental Marine Biology and Ecology. v.340(2)194-203.	Torregiani, J. H. and Lesser, M. P.
2007	Journal Article	Resilience and acclimation to bleaching stressors in the scleractinian coral Porites cylindrica.	Journal of Experimental Marine Biology and Ecology. v.349(1)35-44.	Visram, S. and Douglas, A.E.
2007	Journal Article	Increased prevalence of ubiquitous Ascomycetes in an Acropoid coral (Acropora formosa) exhibiting symptoms of brown band syndrome and skeletal eroding band disease.	Applied and Environmental Microbiology. v.73(8)526-538.	Yarden, O., Ainsworth, T. D., Roff, G., Leggat, W., Fine, M. and Hoegh-Guldberg, O.
2007	Journal Article	Palau’s coral reefs show differential habitat recovery following the 1998-bleaching event.	Coral Reefs. v.26(2)319-332.	Golbuu, Y., Victor, S., Penland, L., Idip, D., Emaurois, C., Okaji, K., Yukihira, H., Iwase, A. and van Woesik, R.
2007	Journal Article	The transition zone chlorophyll front can trigger Acanthaster planci outbreaks in the Pacific Ocean: historical confirmation.	Journal of Oceanography. v.63(1)149-154.	Houk, P., Bograd, S. and van Woesik, R.
2007	Journal Article	Effects of climate and seawater temperature variation on coral bleaching and mortality.	Ecological Monographs. v.77(4)503-525.	McClanahan, T. R., Ateweberhan, M., Muhando, C., Maina, J. and Mohammed, S. M.
2007	Journal Article	Predictability of coral bleaching from synoptic satellite and in situ temperature observations.	Coral Reefs. v.26(3)695-701.	McClanahan, T. R., Ateweberhan, M., Ruiz Sebastian, C., Graham, N. A. J., Wilson, S. K., Bruggemann, J. H. and Guillaume, M. M. M.
2007	Journal Article	Western Indian Ocean coral communities: bleaching responses and susceptibility to extinction.	Marine Ecology. Progress Series. (MEPS). v.337:1-13.	McClanahan, T. R., Ateweberhan, M., Graham, N. A. J., Wilson, S. K., Ruiz Sebastian, C., Guillaume, M. M. M. and Bruggemann, J. H.
2007	Journal Article	Microsatellites from clade B Symbiodinium spp. specialized for Caribbean corals in the genus Madracis.	Molecular Ecology Notes. V.7:1271-1274.	Pettay, D.T. and LaJeunesse, T.C.
2007	Journal Article	The hologenome theory disregards the coral holobiont. Reply to Rosenberg et al.	Nature Reviews: Microbiology. v.5(10)doi:10.1038/nrmicro1635-c1	Leggat,W., Ainsworth, T., Bythell, J., Dove, S., Gates, R., Hoegh-Guldberg, O., Iglesias-Prieto, R. and Yellowlees, D.
2007	Journal Article	Effects of artificial settlement plate materials and methods of deployment on the sessile epibenthic community development in a tropical environment.	Coral Reefs.v.26(2)279-289.	Field, S.N., Glassom, D. and Bythell, J.C.
2007	Journal Article	Phase shifts and the role of herbivory in the resilience of coral reefs.	Coral Reefs v.26(3)641-653.	Ledlie, M.H., Graham, N.A.J., Bythell, J.C., Wilson, S.K., Jennings, S., Polunin, N.V.C. and Hardcastle, J.
2007	Journal Article	Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data.	Journal of Experimental Marine Biology & Ecology. v.356(1-2)36-44	Lesser, M.P., Bythell, J.C., Gates, R.D., Johnstone, R.W. and Hoegh-Guldberg, O.
2007	Journal Article	Coral reefs under rapid climate change and ocean acidification.	Science. v.318:1737-1742.	Hoegh-Guldberg, O., Mumby, P.J., Hooten, A. J., Steneck, R.S., Greenfield, P., Gomez, E., Harvell D. R, Sale, P.F., Edwards, A.J., Caldeira, K., Knowlton, N., Eakin, C. M., Iglesias-Prieto, R., Muthiga, N., Bradbury, R.H., Dubi, A., and Hatziolos, M. E.
2007	Journal Article	Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora millepora.	Science. v.318:467-470.	Levy, O., Appelbaum, L., Leggat, W., Gothlif, Y., Miller, D. J. and Hoegh-Guldberg, O.
2007	Journal Article	Acclimation effect on fatty acids of the coral Montipora digitata and its symbiotic algae.	Comparative Biochemistry and Physiology. Part B. v.146(4)583-589.	Papina, M., Meziane, T. and van Woesik, R.
2007	Journal Article	Bathymetry, water optical properties, and benthic classification of coral reefs using hyperspectral remote sensing imagery.	Coral Reefs. v.26:819-829.	Lesser, M. P. and Mobley, C.
2007	Journal Article	Coral disease diagnostics: what’s between a plague and a band?	Applied & Environmental Microbiology. v.73(3)981-992.	Ainsworth, T.D., Kramasky–Winter, E., Loya, Y., Hoegh-Guldberg, O. and Fine, M.
2007	Journal Article	Nitrogen fixation by symbiotic Cyanobacteria provides a source of nitrogen for the Scleractinian coral Montastraea cavernosa.	Marine Ecology. Progress Series. (MEPS). v.346:143-152.	Lesser, M. P., Falcón, L. I., Rodríguez-Román, A., Enríquez, S., Hoegh-Guldberg, O. and Iglesias-Prieto, R.
2007	Journal Article	Niche partitioning of closely related symbiotic dinoflagellates.	Molecular Ecology.v.16(17)3721-3733.	Sampayo, E., Franceschietis, L., Hoegh-Guldberg, O. and Dove, S.
2007	Journal Article	Phage therapy of coral disease.	Coral Reefs. v.26(1)7-13.	Efrony, R., Loya, Y., Bacharach, E. and Rosenberg, E.
2006	Book	A coral population response (CPR) model for thermal stress.	In Phinney, J.T. et al (eds) Coral reefs and climate change: science and management. Coastal and Estuarine Studies v.61.	van Woesik, R. and Koksal, S.
2006	Journal Article	Annual cycles of solar insolation predict spawning times of Caribbean corals.	Ecology Letters. v.9:390-398.	van Woesik, R., Lacharmoise, F. and Koksal, S.
2006	Journal Article	Detection and enumeration of microbial cells within highly porous calcareous reef sands.	Marine and Freshwater Research. v.57(4)415-420.	Wild, C., Laforsch, C. and Huettel, M.
2006	Journal Article	Benthic oxygen consumption and organic matter turnover in organic-poor, permeable shelf sands.	Aquatic Geochemistry. v.12(10)1-19.	Rusch, A., Huettel, M., Wild, C. and Reimers, C.E.
2006	Journal Article	Spatial patterns of aerobic and anaerobic mineralization rates and oxygen penetration dynamics in coral reef sediments.	Marine Ecology. Progress Series (MEPS). V.309:93-105.	Werner, U., Bird, P., Wild, C., Ferdelman, T., Polerecky, L., Eickert, G., Johnstone, R., Hoegh-Guldberg, O. and de Beer, D.
2006	Journal Article	Environmental effects on bacterial diversity in the surface mucus layer of the reef coral Montastraea faveolata.	Marine Ecology. Progress Series (MEPS). V.328:133-142.	Guppy, R. and Bythell, J.C.
2006	Journal Article	Oxidative Stress in Marine Environments: Biochemistry and Physiological Ecology.	Annual Review of Physiology. V.68:253-278.	Lesser, M. P.
2006	Journal Article	Conservation genetics and the resilience of reef-building corals.	Molecular Ecology. v.15:3863-3883.	van Oppen, M. J. H. and Gates, R. D.
2006	Journal Article	Intra-colonial response to Acroporid ‘‘white syndrome’’ lesions in tabular Acropora spp. (Scleractinia).	Coral Reefs. v.25(2)255-264.	Roff, G., Hoegh-Guldberg, O. and Fine, M.
2006	Journal Article	Increased mortality and photoinhibition in the symbiotic dinoflagellates of the Indo-Pacific coral Stylophora pistillata (Esper) after summer bleaching	Marine Biology. v.149(3)633-642.	Franklin, D.J., Cedres, C. M. M. and Hoegh-Guldberg, O.
2006	Journal Article	Monitoring coral bleaching using a colour reference card.	Coral Reefs. v.25(3)453-460.	Siebeck, U.E., Marshall, N. J., Klüter, A. and Hoegh-Guldberg, O.
2006	Journal Article	Response of holosymbiont pigments from the scleractinian coral Montipora monasteriata to short-term heat stress	Limnology and Oceanography. v.51(2)1149-1158.	Dove, S., Ortiz, J.C., Enriquez, S., Fine, M., Fisher, P., Iglesias-Prieto, R., Thornhill, D. and Hoegh-Guldberg, O.
2006	Journal Article	Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion	Marine Biology. v.148(6)711-722.	Thornhill, D.J., La Jeunesse, T.C., Kemp, D.W., Fitt, W.K. and Schmidt, G.W.
2006	Journal Article	Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality	Ecology Letters. v.9(7)835-845.	Smith, J.E., Shaw, M., Edwards, R.A., Obura, D., Pantos, O., Sala, E., Sandin, S.A., Smriga, S., Hatay, M. and Rohwer, L.
2006	Journal Article	Long-term effects of the 1998 coral bleaching event on reef fish assemblages.	Marine Ecology. Progress Series (MEPS). V.315:237-247.	Garpe, K.C., Yahya, S.A.S., Lindahl, U. and Ohman, M.C.
2006	Journal Article	Fluorescence in situ hybridisation and spectral imaging of coral-associated bacterial communities.	Applied and Environmental Microbiology. v.72(4)3016-3020.	Ainsworth, T.D., Fine, M., Blackall, L. and Hoegh-Guldberg, O.
2006	Journal Article	Energy integration between the solitary polyps of the clonal coral Lobophyllia corymbosa.	Journal of Experimental Biology. v.209(9)1690-1695.	Brickner, I., Frank, U., Oren, U. and Loya, Y.
2006	Journal Article	Ultraviolet radiation effects on the behavior and recruitment of larvae from the reef coral Porites astreoides.	Marine Biology. v.148(3)503-512.	Gleason, D.F., Edmunds, P. J. and Gates, R. D.
2006	Journal Article	Viruses: Agents of coral disease?	Diseases of Aquatic Organisms. v.69(1)101-110.	Davy, S.K., Burchett, S.G., Dale, A.L., Davies, P., Davy, J.E., Muncke, C., Hoegh-Guldberg, O. and Wilson, W. H.
2006	Journal Article	Phototrophic microendoliths bloom during coral "White Syndrome".	Coral Reefs. v.25(4)577-581.	Fine, M., Roff, G., Ainsworth, T.D. and Hoegh-Guldberg, O.
2006	Journal Article	[Perspective] The complexities of coral reef recovery.	Science. v.311:42-43.	Hoegh-Guldberg, O.
2006	Journal Article	Impact of the 1998 bleaching event on δ180 records of Okinawa corals.	Marine Ecology. Progress Series. (MEPS). v.314:127-133.	Rosenfeld, M., Shemesh, A., Yam, R. and Loya, Y.
2006	Journal Article	Population dynamics of zooxanthellae during a bacterial bleaching event.	Coral Reefs. v.25:223-227.	Shenkar, N., Fine, M., Winter, E. K. and Loya, Y.
2006	Journal Article	Identification of a protist-coral association and its possible ecological role.	Marine Ecology. Progress Series. (MEPS). v.317:67-73.	Kramarsky-Winter, E., Harel, M., Siboni, N., Ben Dov, E., Brickner, I., Loya, Y. and Kushmaro, A.
2006	Journal Article	Natural infections of aposymbiotic Cassiopea xamachana scyphistomae from environmental pools of Symbiodinium.	Journal of Experimental Marine Biology & Ecology.v.338(1)50-56.	Thornhill, D. J., Daniel, M.W., LaJeunesse, T.C., Bruns, B.U., Schmidt, G.W. and Fitt, W.K.
2006	Journal Article	Patterns of inorganic phosphate uptake in Cassiopea xamachana: a bioindicator species.	Marine Pollution Bulletin. v.52(5)515-521.	Todd, B.D., Thornhill, D.J. and Fitt, W.K.
2006	Journal Article	The 2.1Å crystal structure of copGFP, a representative member of the Copepod clade within the Green Fluorescent Protein superfamily.	Journal of Molecular Biology. v.359(4)890-900.	Wilmann, P., Battad, J., Petersen, J., Wilce, M., Dove, S., Devenish, R., Prescott, M. and Rossjohn, J.
2006	Journal Article	The 2.0Å crystal structure of a pocilloporin at pH 3.5: the structural basis for pH dependent colour transitions and their linkage to the binding of halides.	Photochemistry and Photobiology. v.82(2)359-366.	Wilmann, P., Battad, J., Beddoe, T., Olsen, S., Smith, S., Dove, S., Devenish, R., Rossjohn, J. and Prescott, M.
2006	Journal Article	The evolutionary history of Symbiodinium and scleractinian hosts—Symbiosis, diversity, and the effect of climate change.	Perspectives in Plant Ecology, Evolution and Systematics. v.8(1)23-43.	Stat, M., Carter, D. and Hoegh-Guldberg, O.
2006	Journal Article	Photosynthesis and light utilization in the Caribbean coral Montastraea faveolata recovering from a bleaching event.	Limnology and Oceanography. v.51(6)2702-2710.	Rodríguez-Román, A., Hernández-Pech, X., Thomé, P. E., Enríquez, S. and Iglesias-Prieto, R.
2006	Journal Article	Aerial exposure influences bleaching patterns.	Coral Reefs. v.25(3) 452	Leggat, W., Ainsworth, T.D., Dove, S.G. and Hoegh-Guldberg, O.
2006	Journal Article	Antimicrobial activity of Red Sea corals.	Marine Biology. v.149(2)357-363.	Kelman, D., Kashman, Y., Rosenberg, E., Kushmaro, A. and Loya, Y.
2006	Journal Article	Bacterial community structure associated with white band disease in the elkhorn coral Acropora palmata determined using culture-independent 16S rRNA techniques	Disease of Aquatic Organisms. v.69(1)79-88.	Pantos, O. and Bythell, J.C.
2006	Journal Article	Amino acid substitutions around the chromophore of the chromoprotein Rtms5 influence polypeptide cleavage.	Biochemical and Biophysical Research Communications. V..340(4)1139-1143.	Turcic, K., Pettikiriarachchi, A., Battad, J., Devenish, R., Willmann, P., Dove, S. and Prescott, M.
2006	Product / Other	Ocean acidification due to increasing atmospheric carbon dioxide	Royal Society (Policy Document) 12/05:68.	Raven, J., Caldeira, K., Elderfield, H., Hoegh-Guldberg, O., Liss, P., Riebesell, U., Shepherd, J., Turley, C. and Watson, A.
2005	Journal Article	Low coral cover in a high-CO2 world.	Journal of Geophysical Research. v.110:C09S06	Hoegh-Guldberg, O.
2005	Journal Article	Perspectives on mucus secretion in corals.	Marine Ecology Progress Series (MEPS).v.296:291-309	Brown, B.E. and Bythell J.C.
2005	Journal Article	Global assessment of coral bleaching and required rates of adaptation under climate change.	Global Change Biology. v.11(12)2251-2265.	Donner, S.D., Skirving, W.J., Little, C.M., Oppenheimer, M. and Hoegh-Guldberg, O.
2005	Journal Article	Tolerance of endolithic algae to elevated temperature and light in the coral Montipora monasteriata from the southern Great Barrier Reef.	Journal of Experimental Biology. v.208(1)75-81.	Fine, M., Meroz-Fine, M.E. and Hoegh-Guldberg, O.
2005	Journal Article	Swimming against the flow.	Science. v.308:860-862.	Genin, A., Jaffe, J., Reef, R., Ricther, R. and Franks, J.
2005	Journal Article	Coral bleaching following wintry weather.	Limnology and Oceanography. v.50(1)265-271.	Hoegh-Guldberg, O., Fine, M., Skirving, W., Johnstone, R., Dove, S. and Strong, A.E.
2005	Journal Article	Comment on "Coral reef calcification and climate change: The effect of ocean warming". Response to McNeil et al. 2004.	Geophysical Research Letters. v.32:L08601.	Kleypas, J. A., Buddemeier, R.W., Eakin, M., Gattuso, J-P, Guinotte, J., Hoegh-Guldberg, O., Iglesias-Prieto, R., Jokiel, P., Langdon, C., Skirving, W. and Strong, A.E.
2005	Journal Article	The effect of temperature on the size and population density of dinoflagellates in larvae from the reef coral Porites astreoides.	Invertebrate Biology.v.124(3)185-193.	Edmunds, P.J., Gates, R.D., Leggat, W. and Hoegh-Guldberg, O.
2005	Journal Article	A novel carbonic anhydrase from the giant clam Tridacna gigas contains two carbonic anhydrase domains.	Federations of European Biochemical Sciences Journal (FEBS) v.272(13)3297-3305.	Leggat, W., Dixon, R., Saleh, S. and Yellowlees, D.
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Connectivity ******

Year	Publicaton Type	Name of Article	Publication	Authors
2009	Journal Article	Tracing Particulates from Produced Water.	In: Lee, K. & Neff, J. (eds) Produced Water: Environmental Risks and Advances in Mitigation Technologies. Springer. [in review]	Ruddick, B. and Taggart, C.
2009	Journal Article	Larval dispersal and marine population connectivity.	Annual Reviews in Marine Science v.1:443-466	Cowen, R.K. and Sponaugle, S.
2009	Journal Article	Genetic structure of juvenile cohorts of bicolor damselfish (Stegastes partitus) along the Mesoamerican barrier reef: chaos through time.	Coral Reefs v.28 (1) 277-288	Hepburn, R.I., Sale, P., Dixon, B. and Heath, D.D.
2008	Book	Coral bleaching and consequences for motile reef organisms: past, present and uncertain future. Chapter 9.	In van Oppen, M. and Lough, J. (eds). Coral Bleaching: Patterns, Processes, Causes and Consequences. Ecological Studies. v.205. Berlin:Springer. Pp.139-158.	Pratchett, M.S., Wilson, S.K., Graham, N.A.J., Munday, P.L., Jones, G.P. and Polunin, N.V.C
2008	Conference Paper	Connectivity and resilience of coral reef metapopulations in MPAs: matching empirical efforts to predictive needs.	89th Annual Meeting of Western Society of Naturalists, 6-9 November 2008. Vancouver, Canada.	White, J.W., Botsford, L.W., Coffroth, M.A., Paris, C., Planes, S., Shearer, T.L., Thorrold, S. and Jones, G.P.
2008	Journal Article	Connectivity: What it is, how it is measured, and why it is important for management of reef fishes.	Procs of 59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize, 2006. National Marine Sanctuaries Series ONMS-08-07.	Sale, P. F. and Kritzner, J.P.
2008	Journal Article	The complete development of larval Caribbean spiny lobster Panulirus argus (Latreille, 1804) in culture.	Journal of Crustacean Biology. v.28(2)306-327.	Goldstein, J.S., Matsuda, H., Takenouchi, T. and Butler IV, M.J.
2008	Journal Article	River-reef connectivity in the Mesoamerican region.	Coral Reefs. v.27:773-781.	Paris, C.B. and Cherubin, L.M.
2008	Journal Article	A global baseline for spawning aggregations of reef fishes.	Conservation Biology. v.22(5)1233-1244.	Sadovy de Mitcheson, Y., Cornish, A., Domeier, M., Colin, P. L., Russell, M., and Lindeman, K.C
2008	Journal Article	Coral reef management and conservation in the light of rapidly evolving ecological paradigms.	Trends in Ecology and Evolution. V.23(10)555-563.	Mumby, P.J. and Steneck, R.S.
2008	Journal Article	Ocean circulation and terrestrial runoff dynamics in the Mesoamerican region from spectral optimization of SeaWiFS data and a high resolution simulation.	Coral Reefs. v.27:503-519.	Cherubin, L.M., Kuchinke, C. and Paris, C.B.
2008	Journal Article	Advantages of using crest nets to sample pre-settlement larvae of reef fishes in the Caribbean Sea.	Fishery Bulletin. v.106(2) 213-221.	Nolan, C.J. and Danilowicz, B.S.
2008	Journal Article	Effects of climate-induced coral bleaching on coral-reef fishes — ecological and economic consequences.	Oceanography and Marine Biology: An Annual Review. v.46:251-296.	Pratchett, M.S., Munday, P.L., Wilson, S.K., Graham, N.A.J., Cinner, J.E., Bellwood, D.R., Jones, G.P. Polunin, N.V.C. and McClanahan, T.R.
2008	Journal Article	Management of coral reefs: Where we have gone wrong and what we can do about it.	Marine Pollution Bulletin. v.56(5)805-809.	Sale, P.F.
2008	Journal Article	Segregation of Queen conch, Strombus gigas, populations from the Yucatan peninsula, Mexico.	Procs of 59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize, 2006. National Marine Sanctuaries Series ONMS-08-07. pp71-88.	Paris, C.B., Perez Perez, M., Kool, J. and Aldana Aranda, D.
2008	Journal Article	Barcoding corals: limited by interspecific divergence, not intraspecific variation.	Molecular Ecology Resources. V.8:247-255.	Shearer, T.L and Coffroth, M.A
2008	Journal Article	Theme section on “Larval connectivity, resilience and the future of coral reefs”.	Coral Reefs [Online]	Jones, G.P., Russ, G.D., Sale, P.F. and Steneck, R.S.
2008	Product / Other	Stemming Decline of the Coastal Ocean: Rethinking Environmental Management.	United Nations University, International Network on Water, Environment and Health (UNU-INWEH) Policy Brief. Hamilton, Canada.	Sale, P.F., Butler IV, M.J., Hooten, A.J., Kritzer, J.P., Lindeman, K.C., Sadovy de Mitcheson, Y.J., Steneck, R.S. and van Lavieren, H.
2008	Product / Other	Marine protected areas. Chapter 8.	In Julius, S.H. and West, J.M. (eds). Adaptation options for climate-sensitive ecosystems and resources. Synthesis and assessment product 4.4, Washington, DC: U.S. Climate Change Science Program.	Keller, B.D., Airamé, S., Causey, B., Friedlander, A., Gleason, D.F., Grober-Dunsmore, R., Johnson, J., McLeod, E., Miller, S.L., Steneck, R S. and Woodley, C.
2007	Book	Calcified Algae.	In Denny, M.W. and Gaines, S.D. (eds) Encyclopedia of Tidepools and Rocky Shores. Encyclopedias of the Natural World 1. Berkeley: University of California Press.	Steneck, R.S. and Martone, P.
2007	Book	Vulnerability of fishes of the Great Barrier Reef to climate change. [Chapter 12]	In Johnson, J. and Marshall, P. (eds) Climate Change and the Great Barrier Reef: A vulnerability assessment. Townsville: Great Barrier Reef Marine Park Authority. pp357-392.	Munday, P.L., Jones, G.P., Sheaves, M., Williams, A.J. and Goby, G.
2007	Journal Article	Adaptive management of the Great Barrier Reef and the Grand Canyon World Heritage Areas.	Ambio: a Journal of the Human Environment. V.36(7)586-592.	Hughes, T.P., Gunderson, L. H., Folke, C., Baird, A. H., Bellwood, D., Berkes, F., Crona, B., Helfgott, A., Leslie, H., Norberg, J., Nyström, M., Olsson, P., Österblom, H., Scheffer, M., Schuttenberg, H., Steneck, R.S., Tengö, M., Troell, M., Walker, B., Wilson, J. and Worm B.
2007	Journal Article	Population connectivity and conservation of marine biodiversity	Oceanography. v.20(3)100-111.	Jones, G.P., Srinivasan, M. and Almany, G.R.
2007	Journal Article	Local replenishment of coral reef fish populations in a marine reserve.	Science. v.316:742-744.	Almany, G.R., Berumen, M.L., Thorrold, S.R., Planes, S. and Jones, G.P.
2007	Journal Article	Morphological predictors of swimming speed: a case study of pre-settlement juvenile coral reef fishes.	Journal of Experimental Biology. v.210:2436-2443.	Fisher, R. and Hogan, J.D.
2007	Journal Article	Critical swimming speed of settlement-stage coral reef fishes from the Caribbean: a methodological and geographical comparison.	Bulletin of Marine Science.v.80(1)219-231.	Hogan, J.D., Fisher, R. and Nolan, C.
2007	Journal Article	Characterization of one trinucleotide and six dinucleotide microsatellite markers in bicolor damselfish, Stegastes partitus, a common coral reef fish	Conservation Genetics. v.8:983-985.	Thiessen, R.J. and Heath, D.D.
2007	Journal Article	Habitat choice, recruitment and the response of coral reef fishes to coral degradation.	Oecologia. v.153:727-737.	Feary, D.A., Almany, G.R., McCormick, M.I. and Jones, G.P.
2007	Journal Article	Predators target rare species in coral-reef fish assemblages.	Oecologia. v.152:751-761.	Almany, G.R., Peacock, L.F., Syms, C., McCormick, M. I. and Jones, G.P
2007	Journal Article	Coral degradation and the structure of tropical reef fish communities.	Marine Ecology Progress Series (MEPS) v.333:243-248.	Feary, D.A., Almany, G.R. Jones, G.P. and McCormick, M.I.
2007	Journal Article	Phase shifts, herbivory and the resilience of coral reefs to climate change.	Current Biology. v.17:360-365.	Hughes, T. P., Rodrigues, M. J., Bellwood, D. R., Ceccarelli, D., Hoegh-Gulberg, O., McCook, L., Moltschaniwskyj, N., Pratchett, M. S., Steneck, R. S. and Willis, B.
2007	Journal Article	Population connectivity in marine systems: An overview.	Oceanography. v.20(3)14-21.	Cowen, R.K., Gawarkiewicz, G., Pineda, J., Thorrold, S.R. and Werner, F.E.
2007	Journal Article	Estimates of in situ larval development time for the lobster, Homarus americanus.	Journal of Crustacean Biology. v.27(3)454-462.	Annis, E.R., Incze, L.S., Wolff, N. and Steneck, R.
2007	Journal Article	Surfing, spinning, or diving from reef to reef: How does it change population connectivity?	Marine Ecology Progress Series (MEPS) v.347:285-300.	Paris, C.B., Chérubin, L.M. and Cowen, R.K.
2007	Journal Article	Coupled biological and physical models: Present capabilities and necessary developments for future studies of population connectivity.	Oceanography. v.20(3)54-69.	Werner, F.E., Cowen, R.K. and Paris, C.B.
2006	Book	Marine Metapopulations.	San Diego. Academic Press.	Kritzer, J.P. and Sale, P.F. (eds.)
2006	Book	The metapopulation ecology of coral reef fishes. [Chapter 2]	In Kritzer, J.P. and P.F. Sale (eds.), Marine Metapopulations. Academic Press, San Diego.	Kritzer, J.P. and Sale, P.F.
2006	Book	The future of metapopulation science in marine ecology. [Chapter16]	In Kritzer, J.P. and P.F. Sale (eds.), Marine Metapopulations. Academic Press, San Diego.	Kritzer, J.P. and Sale, P.F.
2006	Book	The merging of metapopulation theory and marine ecology: Establishing the historical context. [Chapter 1]	In Kritzer, J.P. and P.F. Sale (eds.), Marine Metapopulations. Academic Press, San Diego.	Sale, P.F., Hanski, I. and Kritzer, J.P.
2006	Book	Lessons learned from experimental key-species restoration. [Chapter 12]	In Precht W.F. (ed) Coral Reef Restoration Handbook. CRC Press. Pp.219-234.	Miller, M.W. and Szmant, A.M.
2006	Book	Juvenile and adult ecology. [Chapter 8]	In Phillips, B.F. (ed.). Lobsters: Biology, Management, Aquaculture and Fisheries. Wiley-Blackwell.	Butler, M.J. IV, Steneck, R.S. and Herrnkind, W.F.
2006	Book/Conference Paper	The ecological consequences of catching the big ones.	In Ward, T.M., Geddes, M.C. and Mayfield, S. (eds). Proceedings of the National Symposium on Ecosystem Research and Management of Fish and Fisheries. Adelaide, Sept 2004. Australian Society for Fish Biology. pp. 61-62	Butler, M.J. IV.
2006	Conference Paper	A method of statistical modelling of coral reef fish distribution: can it aid conservation planning in data poor regions?	Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan, June 28-July 2, 2004. pp. 1445-1456.	Beger, M., Jones, G.P. and Possingham, H. P.
2006	Conference Paper	Developmental changes in coral larval buoyancy and vertical swimming behavior: Implications for dispersal and connectivity.	Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan, June 28-July 2, 2004. p431-437.	Szmant, A.M. and Meadows, M.
2006	Conference Paper	Settlement preferences and post-settlement mortality of laboratory cultured and settled larvae of the Caribbean hermatypic corals Montastraea faveolata and Acropora palmata in the Florida Keys, USA.	Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan. June 28-July 2, 2004. p43-49.	Szmant, A.M. and Miller, M.W.
2006	Conference Paper	Connectivity: What it is, how it is measured, and why it is important for management of reef fishes. Caribbean Connectivity Keynote Address.	59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize City, 6-11/11/06	Sale, P.F. and Kritzer, J.P.
2006	Conference Paper	Behavior of larval and postlarval Caribbean spiny lobster and implications for pan-Caribbean connectivity.	7th Larval Biology Symposium. Coos Bay, Oregon. 27/8-1/9/06.	Goldstein, J.S., Matsuda, H., Butler, M. J. IV and Cowen, R.K.
2006	Journal Article	Staying connected in a turbulent world.	Science. v.311:480-481.	Steneck, R.S.
2006	Journal Article	Ocean ecology: Don’t fence me in.	Current Biology. v.16(16)R639-R640	Thorrold, S.R.
2006	Journal Article	Multiple disturbances and the global degradation of coral reefs: are reef fishes at risk or resilient?	Global Change Biology. v.12:2220-2234.	Wilson, S.K., Graham, N.A.J., Pratchett, M.S., Jones G.P. and Polunin, N.V.C
2006	Journal Article	Spawning season fidelity in sympatric populations of Atlantic herring (Clupea harengus).	Canadian Journal of Fisheries and Aquatic Sciences. v.63:607-616.	Brophy, D., Danilowicz, B.S. and King, P.A.
2006	Journal Article	Scaling of connectivity in marine populations.	Science. v.311:522-527.	Cowen, R.K., Paris, C.B. and Srinivasan, A.
2006	Journal Article	Temporal and spatial variability in growth and condition of dab (Limanda limanda) & sprat (Sprattus sprattus) larvae in the Irish Sea.	Fisheries Oceanography. v.15(6)490-507.	Lee, O., Danilowicz, B.S.and Dickey-Collas, M.
2006	Journal Article	Particles are better than dye: Direct measurement of Lagrangian connectivity of coral larvae.	Eos Trans. AGU. v.87 (36) Ocean Sciences Meeting Supplement. Abstract OS46E-17	Ruddick, B.R., Taggart, C.T., Feichter, J., Szmant, A.M. and Whitehead, R.F.
2006	Journal Article	Spatial variation in otolith chemistry of Lutjanus apodus at Turneffe Atoll, Belize.	Estuarine, Coastal and Shelf Science. v.67:673-680.	Chittaro, P.M., Usseglio, P., Fryer, B.J., and Sale, P.F.
2006	Journal Article	Weak genetic structure indicates strong dispersal limits: a tale of two coral reef fish.	Proceedings of The Royal Society. Part B. v.273:1483-1490.	Purcell, J.F.H., Cowen, R.K., Hughes, C.R. and Willams, D.A.
2006	Journal Article	Development and characterization of eight new microsatellite markers for the haremic sandperch, Parapercis cylindrica (Family Pinguipedidae).	Molecular Ecology Notes. v.6:1036-1038.	Smith-Keune, C., Jerry, D.R., Evans, B.S., McCormick, M.I., Munday, P.L. and Jones, G.P.
2006	Journal Article	Transgenerational marking of embryonic otoliths in marine fishes using barium stable isotopes.	Canadian Journal of Fisheries and Aquatic Sciences. v.63(6)1193-1197.	Thorrold, S.R., Jones, G.P., Planes, S. and Hare, J.A.
2006	Journal Article	Water, not food, contributes the majority of strontium and barium deposited in the otoliths of a marine fish.	Marine Ecology Progress Series (MEPS) v.311:125-130.	Walther, B.D. and Thorrold, S.R.
2006	Journal Article	Coral settlement onto Halimeda opuntia: a fatal attraction to an ephemeral substrate?	Coral Reefs. v.25:585-591.	Nugues, M. and Szmant, A.M.
2006	Journal Article	Extended breeding and recruitment periods of fishes on a low latitude coral reef.	Coral Reefs. v.25:673-682.	Srinivasan, M. and Jones, G.P.
2006	Journal Article	Density-dependent population dynamics in juvenile Panulirus argus (Latreille): the impact of artificial density enhancement.	Journal of Experimental Marine Biology and Ecology. v.334:84-95.	Behringer, D.C. and Butler IV, M. J.
2006	Journal Article	The adaptive value of aggregation among juvenile Caribbean spiny lobster: an evaluation using individual-based modeling.	Journal of Crustacean Biology. v.26(4):565-578.	Dolan III, T.W. III and Butler IV, M. J.
2006	Journal Article	Possible demographic consequences to intraspecific shelter competition among American lobsters.	Journal of Crustacean Biology. v.26(4):628-638.	Steneck, R.S.
2006	Journal Article	Resource use and the impact of three herbivorous damselfishes on coral reef communities.	Marine Ecology Progress Series (MEPS) v.328:215-224.	Jones, G.P., Santana, L., McCook L.J. and McCormick, M.I.
2006	Journal Article	Vital demographic statistics and management of the baldchin groper (Choerodon rubescens) from the Houtman Abrolhos Islands.	Marine and Freshwater Research. v57:485-496.	Nardi, K., Newman, S.J., Moran, M.J. and Jones, G.P.
2006	Journal Article	Mass mortality following disturbance in Holocene coral reefs from Papua New Guinea.	Geology. v.34 (11)949-952.	Pandolfi, J. M., Tudhope, A.W., Burr, G., Chappell, J., Edinger, E., Frey, M. Steneck, R., Sharma, C., Yeats, A., Jennions, M., Lescinsky, H. and Newton, A.
2006	Journal Article	Globalization, roving bandits and marine resources.	Science. v.311:1557-1558 + erratum.	Berkes, F., Hughes, T.P., Steneck, R.S., Wilson, J. Bellwood, D. R., Crona, B., Folke, C., Leslie, H., Norberg, J., Nystrom, M., Olsson, P., Osterblom, H., Scheffer, M. and Worm, B.
2006	Journal Article	Is the American lobster, Homarus americanus, overfished? A review of overfishing with an ecologically-based perspective.	Bulletin of Marine Science. v.78(3)607-632.	Steneck, R.S
2006	Journal Article	Genetics and the study of fisheries connectivity among marine species in Asian developing countries.	Fisheries Research. v.78:158-168.	Ablan, Ma.C.A
2006	Journal Article	Microsatellite loci for studies on population differentiation and connectivity of the red-bellied yellow tail fusilier, Caesio cuning (Caesionidae).	Molecular Ecology Notes. v.6:170-172.	Ablan, Ma.C.A.
2006	Journal Article	In situ experiment of ontogenetic variability in the otolith microchemistry of Stegastes partitus.	Marine Biology. v.149:1227-1235.	Chittaro, P.M., Hogan, J.D., Gagnon, J., Fryer, B.J. and Sale, P.F.
2006	Journal Article	The differentiation of Stegastes partitus populations using lapillar and sagittal otolith chemistry.	Journal of Fish Biology. v.68:1909-1917.	Chittaro, P.M., Gagnon, J. and Fryer, B.J.
2005	Book	Is large carnivore conservation equivalent to biodiversity conservation and how can we achieve both?	In Ray, J., Redford, K., Steneck, R. and Berger, J. (eds.) Large Carnivores and the conservation of biodiversity. Island Press.	Ray, J.C., Redford, K.H., Berger, J. and Steneck, R.S.
2005	Book	An ecological context for the role of large carnivorous animals in conserving biodiversity	In Ray, J., Redford, K., Steneck, R. and Berger, J. (eds). Large Carnivores and the conservation of biodiversity. Island Press.	Steneck, R.S.
2005	Book	Large marine carnivores: trophic cascades and top-down controls in coastal ecosystems past and present.	In Ray, J., Redford, K., Steneck, R. and Berger, J. (eds) Large Carnivores and the conservation of biodiversity . Island Press.	Steneck, R.S and Sala, E.A
2005	Book	Lutjanidae: Snappers.	In W.J. Richards (ed). Early Stages of Atlantic Fishes. CRC Press	Lindeman, K.C., Richards, W.J., Lyczkowski-Shultz, J., Drass, D.M., Paris, C.B., Leis, J.M., Lara, M.,and Comyns, B.H.
2005	Book	Grunts: Haemulidae.	In W.J. Richards (ed). Early Stages of Atlantic Fishes. CRC Press	Lindeman, K. B. and Richards, W. J.
2005	Journal Article	Using otolith microchemistry of Haemulon flavolineatum (French Grunt) to characterize mangroves and coral reefs throughout Turneffe Atoll, Belize: Difficulties at small spatial scales.	Estuaries. V.28(3)373-381.	Chittaro, P.M., Usseglio, P., Fryer, B.J., and Sale, P.F.
2005	Journal Article	New paradigms for supporting the resilience of marine ecosystems.	Trends in Ecology and Evolution. v.20(7)380-386.	Hughes, T.P., Bellwood, D.R., Folke, C., Steneck, R.S. and Wilson, J.
2005	Journal Article	Small-scale spatio-temporal variability in ichthyoplankton and zooplankton distribution in relation to a tidal-mixing front in the Irish Sea.	ICES Journal of Marine Science. v.62:1021-1036.	Lee, O., Nash, R.D.M. and Danilowicz, B.S
2005	Journal Article	Larval transport pathways from Cuban snapper (Lutjanidae) spawning aggregations based on biophysical modeling	Marine Ecology Progress Series (MEPS). v.296:93-106.	Paris, C. B., Cowen, R. K., Claro, R. and Lindeman, K.C.
2005	Journal Article	Polymorphic microsatellite loci for the masked goby, Coryphopterus personatus (Gobiidae)	Conservation Genetics. v.6:1059-1062.	Hepburn, R.I., Mottillo, E. Bentzen, P. and Heath, D.D.
2005	Journal Article	Coral reef fish larvae settle close to home.	Current Biology. v.15:1314-1318.	Jones, G., Planes, S. and Thorrold, S.R
2005	Journal Article	Generating molecular markers from zooxanthellate cnidarians.	Coral Reefs. v.24:57-66.	Shearer, T.L., Gutierrez-Rodriguez, C. and Coffroth, M.A
2005	Journal Article	Experimental assessment of sensory modalities of coral-reef fish larvae in the recognition of their settlement habitat.	Behavioural Ecology & Sociobiology. v.58:18-26.	Lecchini D., Planes, S. and Galzin, R
2005	Journal Article	Recruitment in degraded marine habitats: a spatially-explicit, individual-based model for spiny lobster	Ecological Applications. v.15(3)902-918.	Butler, M.J. IV, Dolan, T., Hunt, J.H., Rose, K. and Herrnkind, W.F.
2005	Journal Article	Recruitment of Acropora, Millepora and Stylaster roseus on an experimental substratum.	Coral Reefs. v.24:56	Ruiz-Zárate, M.A. and Arias-González, J.E.
2005	Journal Article	The relation of microhabitat to variation in recruitment of young-of-year coral reef fishes.	Bulletin of Marine Science. v.76(1)123-142.	Sale, P.F., Danilowicz, B.S. Doherty, P.J. and Williams, D.McB.
2005	Journal Article	Interaction between inorganic nutrients and organic matter in controlling coral reef communities in Glovers Reef Belize.	Marine Pollution Bulletin. v.50:566-575.	McClanahan, T.R., Steneck, R.S., Cokos, B., Pietri, D. and Jones, S.
2005	Journal Article	Critical science gaps impede use of no-take fishery reserves.	Trends in Ecology and Evolution. V.20(2)74-80.	Sale, P.F., Cowen, R.K., Danilowicz, B.S., Jones, G.P., Kritzer, J.P., Lindeman,K.C., Planes, S., Polunin, N.V.C., Russ,G.R., Sadovy, Y.J. and Steneck, R.S.
2005	Journal Article	Trouble on the reef: the imperative for managing vulnerable and valuable fisheries.	Fish & Fisheries. V.6:167-185.	Sadovy, Y.
2005	Journal Article	Benthic fisheries ecology in a changing environment: Unravelling process to achieve prediction.	Aquatic Living Resources. V.18:301-311.	Butler, M.J. IV
2005	Journal Article	Juveniles of the Caribbean’s largest coral reef snapper do not use reefs.	Coral Reefs. v.24(3)359	Lindeman, K.C. and DeMaria, D.
2005	Journal Article	Variation in fish density, assemblage composition and relative rates of predation among mangrove, seagrass, and coral reef habitats.	Environmental Biology of Fishes. v.72:175-187.	Chittaro, P.M., Usseglio, P. and Sale, P.F.
2005	Journal Article	Competition, predation, and density-dependent mortality in demersal marine fishes.	Ecology. v.86(1)2847-2859.	Hixon, M.A. and Jones, G.P.
2005	Journal Article	Foragers versus farmers: contrasting effects of two behavioural groups of herbivores on coral reefs.	Oecologia. v.145:445-453.	Ceccarelli, D.M., Jones, G.P. and McCook, L.J.
2005	Journal Article	Effects of territorial damselfish on an algal-dominated coastal coral reef.	Coral Reefs. v.24:606-620.	Ceccarelli, D.M., Jones, G.P. and McCook, L.J.
2005	Journal Article	Phylogeography of colour polymorphism in the coral reef fish, Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef.	Coral Reefs. v.24:392-402.	Messmer, V., van Herwerden, L., Munday, P.L. and Jones, G.P.
2005	Journal Article	Biophysical mechanisms of larval fish ingress into Chesapeake Bay.	Marine Ecology Progress Series (MEPS). v.303:295-310.	Hare, J.A., Thorrold, S.R. Walsh, H., Reiss, C., Valle-Levinson, A. and Jones, C. M.
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Disease ******

Year	Publicaton Type	Name of Article	Publication	Authors
2009	Journal Article	Phage therapy of coral white plague disease: Properties of phage BA3.	Current Microbiology v.58(2)139-145	Efrony, R., Atad, I. and Rosenberg, E.
2009	Journal Article	Spatial variability in distribution and prevalence of Caribbean coral and octocoral diseases l: Community level analysis.	Diseases of Aquatic Organisms v.83(3)195-208	Weil, E. and Croquer, A.
2009	Journal Article	Spatial variability in distribution and prevalence of Caribbean scleractinian coral and octocoral diseases lI: Genera level analysis.	Diseases of Aquatic Organisms v.83(3) 209-222	Croquer, A. and Weil, E.
2008	Book	Coral disease and global climate change.	In Uzochukwu, G. (ed), Proceedings of the 3rd Nat. Conf. on Environ. Sci. and Tech. Greensboro, NC. Springer Press	Smith , G.W. and Smith, M.A.
2008	Book	A Coral Disease Handbook: Guidelines for Assessment, Monitoring and Management	Coral Reef Targeted Research & Capacity Building for Management Program.	Raymundo, L.J., Couch, C.S., Bruckner, A.W., Harvell, C.D., Work, T.M., Weil, E., Woodley, C.M., Jordan-Dahlgren, E., Willis, B.L., Sato, Y and Aeby, G.S.
2008	Book	Biology and Ecology of Puerto Rican Coral Reefs. Chapter 9.	In Reigl, B.M. and Dodge, R.E. (eds). Coral Reefs of the USA. Berlin. Springer Science.	Ballantine, D.L., Appeldoorn, R.S., Yoshioka, P., Weil, E., Armstrong, R., Garcia, J.R., Otero, E., Pagan, F., Sherman, C., Hernandez-Delgado, E.A., Bruckner, A.W. and Lilyestrom, C.
2008	Book	Consequences of coral bleaching for sessile reef organisms. Chapter 8.	In van Oppen, M. and Lough, J. (eds). Coral Bleaching: Patterns, Processes, Causes and Consequences. Ecological Studies. V.205:121-138. Berlin: Springer .	McClanahan, T.R., Weil E., Cortes, J., Baird, A.and Ateweberhan, M.
2008	Conference Paper	Inoculation of Vibrio spp. onto Montastraea faveolata fragments to determine potential pathogenicity.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [7.193]	Weil, E., Ritchie, K.B. and Smith, G.W.
2008	Conference Paper	A survey of Vibrios associated with healthy and yellow-band diseased Montastraea faveolata.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [7.191]	Cunning, R., Thurmond, J.., Smith, G., Weil, E. and Ritchie, K.
2008	Conference Paper	Molecular analysis of bacteria associated with healthy and yellow-band diseased Montastraea faveolata.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [7.190]	Thurmond, J., Weil, E. and Ritchie, K.
2008	Journal Article	Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific.	PLoS ONE v.3(6)e2393	Sussman, M., Willis, B.L., Victor, S. and Bourne, D.G.
2008	Journal Article	Evidence of an inflammatory-like response in non-normally pigmented tissues of two scleractinian corals.	Proceedings of The Royal Society of London. Part B. Biological Sciences. v.275 (1652) 2687-2693/	Palmer, C., Mydlarz, L. and Willis, B.L.
2008	Journal Article	Bacterial growth on coral mucus.	Current Microbiology. v.56:481-488.	Sharon, G. and Rosenberg, E.
2008	Journal Article	Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution.	FEMS Microbiology Reviews. v.32(5)723-735.	Zilber-Rosenberg, I. and Rosenberg, E.
2008	Journal Article	Genome analysis of the coral bleaching pathogen Vibrio shiloi.	Archives of Microbiology. v.190:185-194.	Reshef, L., Ron, E.Z. and Rosenberg, E.
2008	Journal Article	The role of microorganisms in coral bleaching.	ISME Journal (Journal of the International Society for Microbial Ecology) 2008:1-8.	Rosenberg, E., Kushmaro, A., Kramarsky-Winter, E., Banin, E. and Loya, Y.
2008	Journal Article	Determination of carotenoid as the purple pigment in Gorgonia ventalina sclerites using Raman microscopy.	Spectrochimica Acta. Part A. v.69(3)1058-1061.	Leverette, C.L., Warren, M., Smith, M.A. and Smith, G.W.
2008	Journal Article	Gradients of coastal fish farm effluents and their effect on coral reef microbes.	Environmental Microbiology. v.10(9)2299-2312.	Garren, M., Smriga, S. and Azam, F,
2008	Journal Article	Identification of a ciliate (Oligohymenophora: Scuticociliata) associated with brown band disease (BrB) on corals of the Great Barrier Reef.	Applied & Environmental Microbiology [Online] doi:10.1128/AEM.01124-07	Bourne, D.G., Boyett, H.V., Hendersen, M.E., Muirhead, A. and Willis, B.L.
2008	Journal Article	ReefTemp: An interactive monitoring system for coral bleaching using high-resolution SST and improved stress predictors.	Geophysical Research Letters. v.35: L05603.	Maynard, J.A., Turner, P.J., Anthony, K.R.N., Baird, A.H., Berkelmans, R., Eakin, C.M., Johnson, J., Marshall, P.A., Packer, G.R., Rea, A. and Willis, B.L.
2008	Journal Article	Biochemical and veterinary science can increase our understanding of coral disease.	Journal of Experimental Marine Biology and Ecology. v.362:63-70.	Work, T.M., Richardson, L.L., Reynolds, T.L. and Willis, B.L.
2008	Journal Article	Variation in measures of immunocompetence of sea fan coral, Gorgonia ventalina, in the Florida Keys.	Marine Biology. v.155:281-292.	Couch, C.S., Mydlarz, L.D., Harvell, C.D. and Douglas, N.L.
2008	Journal Article	Bacterial growth on coral mucus.	Current Microbiology. v.56:481-488.	Sharon, G. and Rosenberg, E.
2008	Journal Article	Bacteria associated with the bleached and cave coral Oculina patagonia.	Microbial Ecology. v.55(3)523-529.	Koren, O. and Rosenberg, E.
2008	Journal Article	Microbial ecology of four coral atolls in the Northern Line Islands.	PLoS ONE. v.3(2)e1584	Dinsdale, E.A., Pantos, O., Smriga, S., Edwards, R.A., Angly, F., Wegley, L., Hatay, M., Hall, D., Brown, E., Haynes, M., Krause, L. Sala, E., Sandin, S.A., Vega Thurber, R., Willis, B.L., Azam, F., Knowlton, N. and Rohwer, F.
2008	Journal Article	The Vibrio core group induces yellow band disease in Caribbean and Indo-Pacific reef-building corals.	Journal of Applied Microbiology v.105:1658-1671.	Cervino, J.M., Thompson, F. L., Gómez-Gil, B., Lorence, E.A., Goreau, T. J., Hayes, R. L., Winiarski-Cervino, K.B., Smith, G.W., Hughen, K. and Bartels, E.
2008	Journal Article	Epidemiology of skeletal eroding band on the Great Barrier Reef and the role of injury in the initiation of this widespread coral disease.	Coral Reefs. v.27(2)257-272.	Page, C.A. and Willis, B.L.
2008	Journal Article	Strong relationship between coral bleaching and growth anomalies in massive Porites.	Global Change Biology. [Online]	McClanahan, T.R., Weil, E., Maina, J. and Lohr, J.
2008	Journal Article	Evaporite microbial films, mats, microbialites and stromatolites.	In Dilek, Y., Furnes, H. and Muehlenbachs, K. (eds), Links between Geological Processes, Microbial Activities and Evolution of Life. Modern Approaches in Solid Earth Sciences. v.4:197-235. Springer.	Brigmon, R.L., Morris, P. and Smith, G.
2008	Product / Other	The State of Coral Reef Ecosystems of Puerto Rico. Chapter 3.	In Wadell, J.E. and Clarke, A.M. (eds) The State of Coral Reef Ecosystems of the United States and Pacific Freely Associated States: 2008. NOAA Technical Memorandum NOS NCCOS 73. pp75-116.	García-Sais, J., Appeldoorn, R., Battista, T., Bauer, L., Bruckner, A., Caldow, C., Carrubba, L. Corredor, J., Diaz, E., J.D., Lilyestrom, C., Garcia-Moliner, G., Hernandez-Delgado, W., Menza, C., Morell, J., Pait, T., Sabater, J., Weil, E., Williams, E. and Williams, S.
2008	Product / Other	Marine Protected Area Surveys of the Central Visayas—2007.	Summary Report. University of Guam Technical Report No. 122.	Raymundo, L., Maypa, A., Rojas, P. and Myers, R.
2008	Product / Other	Underwater cards for assessing coral health on Indo-Pacific reefs.	Coral Reef Targeted Research & Capacity Building for Management Program.	Beeden, R., Willis, B.L., Raymundo, L., Page, C.A. and Weil, E.
2008	Product / Other	Underwater cards for assessing coral health on Caribbean reefs.	Coral Reef Targeted Research & Capacity Building for Management Program.	Weil, E. and Hooten, A.J.
2008	Product / Other	Arrecifes coralinos de Cozumel.	In Mejía Ortiz, L.M. (ed.) Biodiversidad Acuática de la Isla de Cozumel. Mexico: Plaza y Valdéz.	Jordán-Dahlgren, E.
2007	Book	Vulnerability of reef-building corals on the Great Barrier Reef to climate change. Chapter 10.	In Johnson, J.E. & Marshall, P.A. (eds) Climate Change and the Great Barrier Reef: A vulnerability Assessment. Great Barrier Reef Marine Park Authority, Townsville & Australian Greenhouse Office.	Hoegh-Guldberg, O., Anthony, K.R., Berkelmans, R., Dove, S., Fabricius, K., Lough, J., Marshall, P., van Oppen, M.J.H., Negri, A. and Willis, B.L.
2007	Journal Article	The role of microorganisms in coral health, disease and evolution.	Nature Reviews: Microbiology. v.5(5)355-362	Rosenberg, E., Koren, O., Reshef, L., Efrony R. and Zilber-Rosenberg I.
2007	Journal Article	Coral microbiology.	Oceanography. v.20(2)146-154	Rosenberg, E., Kellogg, C.A., and Rohwer, F.
2007	Journal Article	Phage therapy of coral disease	Coral Reefs. v.26:7-13	Efony, R., Loya, Y., Bacharach, E. and Rosenberg, E.
2007	Journal Article	Exploring the role of chitinolytic enzymes in the sea fan coral, Gorgonia ventalina.	Marine Biology. v.150:1137-1144.	Douglas, N.L., Mullen, K., Talmage, S. and Harvell, C.D.
2007	Journal Article	Peroxidase activity and inducibility in the sea fan coral exposed to a fungal pathogen.	Comparative Biochemistry & Physiology. Part A. v.146:54-62	Mydlarz, L. and Harvell, C.D.
2007	Journal Article	Bacterial communities associated with the mucopolysaccharide layers of three coral species affected and unaffected with dark spots disease	Canadian Journal of Microbiology. v.53(4)465-471.	Gil-Agudelo, D.L,, Fonseca, D.P., Weil, E., Garzón-Ferreira, J. and Smith G.W.
2007	Journal Article	Coral disease, environmental drivers and the balance between coral and microbial associates.	Oceanography. v.20(1)172-195.	Harvell, C.D., Jordan-Dahlgren, E., Merkel, S., Rosenberg, E., Raymundo, L., Smith, G.W., Weil, E. and Willis, B.
2007	Journal Article	Temperature affects coral disease resistance and pathogen growth.	Marine Ecology. Progress Series. V.329:115-121.	Ward, J.R., Kim, K. and Harvell, C.D.
2007	Journal Article	Within-host disease ecology in the sea fan Gorgonia ventalina: modeling the spatial immunodynamics of a coral-pathogen interaction.	The American Naturalist. v.170(6)E143-E161.	Ellner, S., Jones, L., Mydlarz, L. and Harvell, C.D.
2007	Journal Article	Thermal stress and coral cover as drivers of coral disease outbreaks.	Public Library of Science (PLoS) Biology. v.5(6)e124:1220-1227	Bruno, J.F., Selig, E.R., Casey, K.S., Page, C.A., Willis, B.L., Harvell, C.D., Sweatman, H. and Melendy, A.M.
2007	Journal Article	Bacteria associated with the coral Echinopora lamellosa (Esper 1795) in the Indian Ocean -Zanzibar Region.	African Journal of Environmental Science & Technology. v.1(5)93-98.	Piskorska, M., Smith, G. and Weil, E.
2007	Journal Article	The relationship between water quality, δ15N, and aspergillosis of Caribbean sea fan corals.	Marine Ecology. Progress Series. v.343:123-130.	Baker, D.M., MacAvoy, S.E. and Kim, K.
2007	Journal Article	Elevated temperature and light enhance progression and spread of black band disease on staghorn corals of the Great Barrier Reef.	Marine Biology. v.151:1711-1720.	Boyett, H.V., Bourne, D.G. and Willis, B.L.
2006	Book	Analyzing the relationship between ocean temperature anomalies and coral disease outbreaks at broad spatial scales.	In Phinney, J., Skirving, W., Kleypas, J. & Hoegh-Guldberg, O. (eds). Coral reefs and climate change: Science and management. 61.(Coastal & Estuarine Sciences) pp111-128. AGU Press.	Selig, E.R., Harvell, C.D,. Bruno, J., Willis, B., Page, C., Casey, K. and Sweatman, H.
2006	Book	Characterization of coral surface microbiota using metabolic profiling.	In Proceedings of the 10th International Coral Reef Symposium. pp.149-152.	Gil-Agudelo, D.L., Ali-Hassan, L., Kim, K. and Smith, G.W.
2006	Journal Article	Changes in the microbial communities associated with Gorgonia ventalina during aspergillosis infection.	Diseases of Aquatic Organisms. v.69:89-94.	Gil-Agudelo, D.L., Myers, C., Smith, G.W. and Kim, K.
2006	Journal Article	Distribution, host range and large-scale spatial variability in black band disease prevalence on the Great Barrier Reef, Australia.	Diseases of Aquatic Organisms. v.69:41-51.	Page, C. and Willis, B.
2006	Journal Article	Coral diversity and disease in Mexico.	Diseases of Aquatic Organisms. v.69:23-31.	Ward, J.R., Rypien, K., Bruno, J., Harvell, C., Jordan-Dahlgren, E., Mullen, K., Rodriguez-Martinez, R., Sanchez, J. and Smith, G.
2006	Journal Article	Status and progress in coral disease research.	Diseases of Aquatic Organisms. v.69:1-7.	Weil, E., Smith, G.W. and Gil-Agudelo, D.
2006	Journal Article	Thalassomonas loyana sp. nov., a causative agent of the white plague-like disease of corals on the Eilat coral reef.	International Journal of Systematic & Evolutionary Microbiology. V. 56(2)365-368	Thompson, F.L., Barash, Y., Sawabe, T., Sharon, G., Swings, J. and Rosenberg, E.
2006	Journal Article	Folliculinid ciliates: a new threat to Caribbean corals?	Diseases of Aquatic Organisms. v.69:75-78	Croquer, A., Bastidas, C. and Lipscomb, D.
2006	Journal Article	The white band disease type II pathogen in Puerto Rico.	Rev.Biol.Trop (International Journal of Tropical Biology) v.54 Supp 3:59-67	Gil-Agudelo, D.L., Smith, G. and Weil, E.
2006	Journal Article	Identification of bacteria associated with a disease affecting the marine sponge Ianthella basta in New Britain, Papua New Guinea.	Marine Ecology. Progress Series. V.324:139-150.	Cervino, J.M., Winiarski-Cervino, K., Polson, S.W., Goreau, T. and Smith, G.W.
2006	Journal Article	Saharan dust — a carrier of persistent organic pollutants, metals and microbes to the Caribbean?	Rev.Biol.Trop (International Journal of Tropical Biology) v.54 Supp 3:9-21.	Garrison, V.H., Foreman, W.T., Genualdi, S., Griffin, D.W., Kellogg, C.A., Majewski, M.S., Mohammed, A., Ramsubhag, A., Shinn, E.A., Simonich, S.L. and Smith, G.W.
2006	Journal Article	Host range and resistance to aspergillosis in three sea fan species from the Yucatan	Marine Biology. v.149:1355-1364.	Mullen, K., Harvell, C.D., Alker, A., Dube, D., Jordan-Dahlgren,E., Ward, J. and Petes, L.
2006	Journal Article	Innate immunity, environmental drivers, and disease ecology of marine and freshwater invertebrates	Annual Review of Ecology, Evolution and Systematics. v.37:251-288.	Mydlarz, L., Jones, L. and Harvell, C.D.
2006	Journal Article	A single cyanobacterial ribotype is associated with both red and black bands on diseased corals from Palau.	Diseases of Aquatic Organisms. v.69:111-118	Sussman, M., Bourne, D.G. and Willis, B.L
2006	Journal Article	Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter.	Applied and Environmental Microbiology. v.72(8) 5254-5259.	Koren, O. and Rosenberg, E.
2006	Journal Article	First report of folliculinid ciliates affecting Caribbean scleractinian corals.	Coral Reefs. v.25(2)187-191.	Cróquer, A., Bastidas, C., Lipscomp, D., Rodríguez-Martínez, R.E., Jordan-Dahlgren, E. and Guzman, H.M.
2006	Journal Article	The coral probiotic hypothesis.	Environmental Microbiology. V.8(12)2068-2073.	Reshef, L., Koren, O., Loya, Y., Zilber-Rosenberg, I.Z. and Rosenberg, E.
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Modelling & Decision Support ******

Year	Publicaton Type	Name of Article	Publication	Authors
2008	Book	Status of Coral Reefs in Lingayen Gulf	In Coral Reef Information Network of the Philippines (PhilReefs). 2008. Reefs through time 2008: Initiating the state of the coasts reports. Coral Reef Information Network of the Philippines (PhilReefs), MPA Support Network, Marine Environment & Resources Foundation, Inc. and the Marine Science Institute, University of the Philippines, Diliman, Quezon City, pp. 15-25.	Geronimo, R.C., Salmo III, S., Deocadez, M.R.,Castrence Jr., F., Pacifico, K., Junsan, C. and Sagip Lingayen Gulf Project and Partners.
2008	Conference Paper	Biodiversity and ecosystem functioning in three coral reefs at the Mexican Caribbean.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [10.384]	Rodriguez-Zaragoza, F. and Arias-Gonzalez, J.
2008	Conference Paper	Factors influencing coral recruitment patterns in the Sulu Sea marine corridors	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [10.274]	Garcia, J. and Alino, P.
2008	Conference Paper	Great Barrier Reef coral communities: Resilient in the 1980s but struggling in the 2000s	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [12-28]	Done, T., Devantier, L., Turak, E., Wakeford, M., McDonald, A. and Johnson, C.
2008	Conference Paper	Spatial prediction of reef bathymetry and geomorphology using high-resolution satellite imagery.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [17-6]	Garza-Perez, J.R., Rankey, E.C., Ginsburg, R.N., Reeder, S.L., Guidry, S.A. and Guarin, H.
2008	Conference Paper	Life after death: Pleistocene reefs of Sisal, Yucatan Shelf.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [17.583]	Zarco-Perello, S., Garza-Perez, J.R., Simoes, N., Mascaro-Miquelajauregui, M. and Chiappa-Carrara, X.
2008	Conference Paper	Impacts of coastal development on ecosystem structure and function of Yucatan coral reefs, Mexico.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18.734]	Bozec, Y-M., Acosta-Gonzalez, G., Nunez-Lara, E.and Arias-Gonzalez, J.E.
2008	Conference Paper	Coral reef biodiversity loss at Mexican Caribbean due to the increasing tourist development effects.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18.758]	Acosta-Gonzalez, G.,Rodriguez-Zaragoza, F,, Gonzalez-Salas, C, and Arias-Gonzalez, J.
2008	Conference Paper	Coral community structure of the Bolinao Reef System, northwest Philippines.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18.643]	Vergara, M.W., Licuanan, W. and Alino, P.
2008	Conference Paper	Status of the Philippine coral reefs: 2004-2007.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18.673]	Gonzales, R.O., Deocadiz, M., Alino, P., Nanola, C., Arceo, H., Geronimo, R.,Campos, W., Salmo III, S., Uychiaoco, A.J. and Reboton, C.
2008	Conference Paper	One fish, two fish, red fish, blue fish: the use of simple agent-based models and role-play games to communicate key messages to community groups.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20-15]	Cleland, D., Geronimo, R., Dray, A., Perez, P. and Trinidad, A.
2008	Conference Paper	Models of coral reefs with and without macroalgae indicate differential resilience to fishing and anthropogenic nutrients.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20-6]	Fung, T., Seymour, R. and Johnson, C.
2008	Conference Paper	Predicting reef futures using a multi-scale coral reef ecosystem model.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20-14]	Melbourne-Thomas, J., Johnson, C., Fung, T. and Seymour, R.
2008	Conference Paper	The new commons: Why coral reef scientists should get out more.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20-12]	Seymour, R. and Bradbury, R.
2008	Conference Paper	The rites of passage in the marine corridors of the Sulu Sea.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20.804]	Alino, P., Campos, W., Francisco, K., Mamauag, S., Geronimo, R., Licuanan, W., Villanoy, C., Deocadiz, M. and Beldia, P.
2008	Conference Paper	Implications of coastal development on resilience in linked socio-ecological Mexican Caribbean system.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [21-33]	Arias-Gonzalez, J., Rivera, R., Bozec, Y-M., Rodriguez-Zaragoza, F., Castro-Perez, J., Villegas-Sanchez, C., Acosta-Gonzalez, G. and Lara-Arenas, H.
2008	Conference Paper	Trajectories of ecosystem change in an extremely degraded reef in the Philippines.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [22.837]	Geronimo, R., Alino, P., Castrence, Jr. F. and Uychiaoco, A.J.
2008	Conference Paper	Hurricane Dean impacts on Chinchorro Bank coral reefs, Mexico: Bases to implement ecosystem-based fisheries management.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23-66]	Hernandez, A., Rodriguez-Zaragoza, F., Acosta-Gonzalez, G., Ruiz-Zarate, M., Castro-Perez, J., Medina-Hernandez, A. and Garcia-Rivas, M.
2008	Conference Paper	Using ichthyoplankton distribution in selecting sites for an MPA network in the Sulu Sea, Philippines.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23.6]	Beldia III, P., Campos, W., Villanoy, C., Canto, M. and Alino, P.
2008	Conference Paper	Spatial diversity of coral reef communities in Sulu Sea marine corridors	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23.903]	Licuanan, W.R., Luzon, K. and Alino, P.
2008	Conference Paper	Scaling-up efforts for fisheries management and marine biodiversity conservation through networks of marine protected areas in marine corridors within the Sulu-Sulawesi seascape.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23.985]	Quibilan, M. C., Alino, P., Vergara, S. and Trono, R.
2008	Conference Paper	Gaining ground in improving Marine Protected Areas (MPAs): The Philippine experience.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23.1038]	Arceo, H., Alino, P., Lumbab, V., Nanola, C. and Portigo, Ma. F.
2008	Conference Paper	Plan B for the Anthropocene.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23-75]	Bradbury, R. and Seymour, R.
2008	Journal Article	Scaling up beta diversity on Caribbean coral reefs.	Journal of Experimental Marine Biology and Ecology. v.366 (1-2)28-36.	Arias-González, J. E., Legendre, P and Rodriguez-Zaragoza, F.A.
2008	Journal Article	Additive diversity partitioning of reef fishes across multiple spatial scales.	Caribbean Journal of Science v.44(1)90-101	Rodriguez-Zaragoza, F.A. and Arias-González, J. E.
2008	Journal Article	Preliminary survey of fish community composition in seagrass habitat in two back-reef lagoons of the southern Mexican Caribbean.	Gulf and Caribbean Research v.20(1)41-47	Yeager, L. A. and Arias-González, J. E.
2007	Book	Going beyond FISH-BE: Towards understanding ecosystem scale and simple rules for local fisheries management	In Philippine Environmental Governance (EcoGov 2) Project. 2007. FISH-BE Library of Models. Aliño, P.M. (ed). EcoGov 2 Project, Pasig City, Philippines, 100pp.	Licuanan, W.R.Y., Geronimo, R.C. and Aliño, P.M.
2007	Conference Paper	Decision support tools for managing coral reef systems at local to regional scales	Proceedings, Environmental Research Event (ERE 2007), Townsville, Australia. ERE 2007 Organising Committee.	Melbourne-Thomas, J., Johnson, C. R., Fung, T. and Seymour, R. M.
2007	Electronic Resource (Web)	Banco Chinchorro Information System	http://acme.math.cinvestav.mx:80/~merida/mapa.html	Arias-González, J.E., Acosta-González, G., Hernández-Juárez, E. and Sagols-Troncoso, F. D.
2007	Product / Other	Going Beyond FISH-BE: Towards understanding ecosystem scale and simple rules for local fisheries management.	In Aliño, P.M. (ed). FISH-BE Library of Models. Philippine Environmental Governance (EcoGov 2) Project. 2007. Pasig City, Philippines, 100pp.	Licuanan, W.R.Y., R.C. Geronimo, and P.M. Aliño
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Remote Sensing ******

Year	Publicaton Type	Name of Article	Publication	Authors
2009	Journal Article	Cost Effective Mapping of Seagrass And Coral Reef Environments With Variable Water Clarity	Coral Reef	Roelfsema, C.M., S.R. Phinn
2008	Journal Article	Automated benthic counting of living and non-living components in Ngedarrak Reef, Palau via subsurface underwater video.	Environmental Monitoring and Assessment. V.145(1-3)177-184	Marcos, Ma. S.A., David, L.T., Penaflor, E., Ticzon, V. and Soriano, M.
2008	Book	Hurricanes and their effects on coral reefs.	In C. Wilkinson & D. Souter [Eds.], Status of Caribbean Coral Reefs after Bleaching and Hurricanes in 2005.	Heron, S., Morgan, J., Eakin, M. and Skirving, W.
2008	Book	The 2005 Bleaching Event: Coral-List Log	In C. Wilkinson & D. Souter [Eds.], Status of Caribbean Coral Reefs after Bleaching and Hurricanes in 2005.	Morgan, J., Heron, S. and Eakin, M.
2008	Book	Coral Bleaching	In M.D. King, et al. [Eds.], Our Changing Planet: The View From Space	Liu, G. and Strong, A.E.
2008	Book	Remote sensing: The promise and the reality.	In: Dennison, W.,(Ed.) Coastal Assessment Handbook, University of Maryland Press. In press.	Phinn, S.R., Stumpf, R. and Roelfsema, C.M.
2008	Conference Paper	Cost Effective Mapping of Seagrass And Coral Reef Environments With Variable Water Clarity	11th International Coral Reef Symposium, Florida, USA, July 2008.	Roelfsema, C.M. and Phinn, S.R.
2008	Conference Paper	NOAA Coral Reef Watch Experimental Coral Bleaching Forecast Tool	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Liu, C-T., Christensen, T.R., Eakin, M., Morgan, J., Strong, A.E., Skirving, W., and Heron, S.
2008	Conference Paper	CREIOS: NOAA’s Coral Reef Ecosystem Integrated Observing System	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Morgan, J., Eakin, M., Brainard, J.C., Hendee, J.E., Monaco, M.E., Christensen, T.R., Heron, S., Liu, C-T., Strong, A.E. and Skirving, W.
2008	Conference Paper	Implications for our Coral Reefs in a Changing Climate over the next few decades – Hints from the past 22 years	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Strong, A.E., Liu, C-T., Christensen, T.R., Eakin, M., Morgan, J., Skirving, W. and Heron, S.
2008	Conference Paper	Producing a satellite SST climatology -- how long is a piece of string?	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Heron, S., Christensen, T.R., Eakin, M., Liu, G., Morgan, J., Strong, A.E. and Skirving, W.
2008	Conference Paper	Going, Going, Gone? Are 1998 and 2005 Signs of the Future for Coral Reefs	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Eakin, M., Morgan, J., Heron, S., Lough, Skirving, W., Liu, G., Christensen, T.R., Gledhill, D.K. and Strong, A.E.
2008	Conference Paper	Linking environmental factors with coral disease events in the Caribbean	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Christensen, T.R., Heron, S., Skirving, W., Eakin, M., Willis, B., Harvell, C.D., Page, Mumby, P.J., Raymundo, L., Weil, E., Jordan, Bruno, Gledhill, D.K., Morgan, J. and Liu, G.
2008	Conference Paper	A methodology for using satellite-based temperature and light measurements for predicting coral bleaching severity and mortality	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Skirving, W., Christensen, T.R., Dove, S., Eakin, M., Enriquez, S., Hedley, J., Heron, S., Hoegh-Guldberg, O., Iglesias, R., Mumby, P.J. and Strong, A.E.
2008	Conference Paper	Monitoring oceanic and coastal variability in carbonate chemistry: tracking ocean acidification in the greater Caribbean region	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Gledhill, D.K., Wanninkhof, R., Millero, F.J., Eakin, C.M., Langdon, C., Hendee, J., Christensen, T.R., Strong, A.E., Skirving, W., Moran, Liu, G., Heron, S.
2008	Conference Paper	Poster: NOAA Coral Reef Watch: Satellite Data Products for Coral Reef Managers, Through the World Bank/GEF Coral Reef Targeted Research Program	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Christensen, Strong, Skirving, Eakin, Morgan, Liu, Heron, Gledhill
2008	Conference Paper	Poster: Satellite detection of low wind events conducive to mass coral bleaching: the NOAA Coral Reef Watch Experimental Doldrums Product	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Gledhill, Gramer, Strong, Skirving, Christensen, Morgan, Liu, Heron, Eakin
2008	Conference Paper	NOAA Coral Reef Watch: Global satellite monitoring for coral reefs	11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA	Parker, Eakin, Morgan, Christensen, Liu, Heron, Gledhill, Skirving, Strong
2008	Conference Paper	Australia’s Environmental Monitoring Information Needs for a Multi-spectral, Moderate Spatial Resolution Imaging Satellite Program.	In: Proceedings of the 14th AustralAsian Remote Sensing and Photogrammetry Conference, Darwin, September 2008.	Phinn, S.R., Held, A. and Roelfsema, C.M.
2008	Conference Paper	Performance of Remote Sensing Approaches for Mapping Benthic Habitats Over a Range of (Sub-)Tropical Coastal Environments.	In: Proceedings of the 14th AustralAsian Remote Sensing and Photogrammetry Conference, Darwin, September 2008.	Roelfsema, C.M. and Phinn, S.R.
2008	Conference Paper	Mapping Coral Reef Benthic Zones from High-Spatial Resolution Image Segmentation and Photo Transect Data.	In: Proceedings of the 11th International Coral Reef Symposium, Fort Lauderdale, USA, July 7-11 2008.	Phinn, S.R., Roelfsema, C.M., Leiper, I. and Mumby, P.J.
2008	Conference Paper	Calibration and Validation of Coral Reef Benthic Community Maps from High-Spatial Resolution Satellite Data.	In: Proceedings of the 11th International Coral Reef Symposium, Fort Lauderdale, USA, July 7-11 2008.	Roelfsema, C.M. and Phinn, S.R.
2008	Conference Paper	Mapping Coral Reef Benthic Communities with High Spatial Resolution Image Data.	In: Proceedings of the 11th International Coral Reef Symposium, Fort Lauderdale, USA, July 7-11 2008.	Leiper, I., Phinn, S.R. and Roelfsema, C.M.
2008	Journal Article	A three-dimensional radiative transfer model for shallow water environments.	Optics Express	Hedley, J.D.
			v.16(26) 21887-21902
2008	Journal Article	Benthic Habitat Mapping in Variable Water Clarity Regimes: Optimal Remote Sensing Approaches	Remote Sensing of Environment	Roelfsema, C.M. and Phinn, S.R.
2008	Journal Article	Seagrass mapping and monitoring methods in tropical Australia, Invited special issue on “Marine Benthic Habitats of the Pacific and Other Oceans: Status, Use, and Management”		Rasheed, M., McKenzie, L., Roelfsema, C.M. and Phinn, S.R.
2008	Journal Article	An Integrated Field and Remote Sensing Approach for Mapping Seagrasses Cover and Species in an Complex Estuary, Moreton Bay, Australia.	Journal of Spatial Science	Roelfsema, C.M., Phinn, S.R. Udy, N. and Maxwell, P.
2008	Journal Article	Mapping Seagrass Species, Cover and Biomass in Shallow Waters: An Assessment of Satellite Multi-spectral and Airborne Hyper-spectral Imaging Systems in Moreton Bay (Australia).	Remote Sensing of Environment.	Phinn, S.R., Roelfsema, C.M., Brando, V.B., Dekker, A.G. and Anstee, J.
2008	Journal Article	Special Feature – High spatial resolution remote sensing for environmental monitoring and management.	Journal of Spatial Science	Johansen, K., Roelfsema, C. and Phinn, S.R.
2008	Journal Article	Environmental and Sensor Limitations in Optical Remote Sensing of Coral Reefs: Implications for monitoring and sensor design	Remote Sensing of Environment.	Hedley, J., Roelfsema, C., Phinn, S.R. and Mumby, P.J.
2008	Journal Article	An Examination of Variability in Vertical Radiometric Profiles in a Coral Reef Environment	Journal of Coastal Research	Holden, H. and LeDrew, E.
2008	Journal Article	The impact of ecosystem connectivity on coral reef resilience	Journal of Applied Ecology	Mumby, P.J. and Hastings, A .
2008	Journal Article	Coral reef management and conservation in the light of rapidly-evolving ecological paradigms	Trends in Ecology and Evolution	Mumby, P.J. and Steneck, R.S.
2008	Journal Article	Coral reef habitats as surrogates of species, ecological functions and ecosystem services	Conservation Biology	Mumby PJ, Broad K, Brumbaugh DR, Dahlgren CP, Harborne AR, Hastings A, Holmes KE, Kappel CV, Micheli F, Sanchirico JN
2008	Newspaper Article	Coral Reefs Under Rapid Climate Change and Ocean Acidification	The Undersea Journal (PADI’s magazine for dive industry professionals)	Christensen, T.R., Eakin, M., Hoegh-Guldberg, O. and Mumby, P.J.
2008	Book	Remote sensing: The promise and the reality.	In: Dennison, W.,(Ed.) Coastal Assessment Handbook, University of Maryland Press. In press.	Phinn, S.R., Stumpf, R., and Roelfsema, C.M.
2008	Journal Article	An Examination of Variability in Vertical Radiometric Profiles in a Coral Reef Environment	Journal of Coastal Research	Holden, H., E. LeDrew
2007	Journal Article	Photo-library method for mapping seagrass biomass.	Estuarine, Coastal and Shelf Science v.75 (4) 559-563	Kutser, T., Vahtmäe, E. Roelfsema, C.M. and Metsamaa, L.
2007	Conference Paper	Mapping benthic habitats on Fijian coral reefs: Evaluating combined field and remote sensing approaches.	TS9.5. Proceedings of Asian Conference on Remote Sensing, Kuala Lumpur, Malaysia, 12-16 November 2007.	Roelfsema, C.M., S.R. Phinn, and Comley, J.
2007	Conference Paper	Mapping benthic habitats on Fijian coral reefs: Integrating field and remote sensing approaches.	GeoHab 2007: Marine Benthic Habitats of the Pacific and Other Oceans: Status, Use, and Management. Noumea, New Caledonia, May 2-6.	Roelfsema, C.M., Phinn, S.R., and Zann, L.
2007	Conference Paper	Mapping of tropical benthic habitats in Fiji: a study into integrated field and/or remote sensing approaches.	GIS and Remote Sensing South Pacific User Conference, Suva, 26-29 November 2006	Roelfsema, C.M., Phinn, S.R. and Zann, L.
2007	Conference Paper	Marine remote sensing toolkit for mapping and monitoring coastal environments.	GIS and Remote Sensing South Pacific User Conference, Suva, 26-29 November 2006	Roelfsema, C.M., Phinn, S.R.. Dekker, A.E., Brando V. and Bell, A.
2007	Conference Paper	Measuring structural complexity on coral reefs.	Proceedings of American Acadamy of Underwater Sciences	Knudby, A. and LeDrew, E.
2007	Journal Article	Trophic cascade facilitates coral recruitment in a marine reserve.	PNAS v.104(20)8362-8367	Mumby, P.J., Harborne, A.R., Williams, J., Kappel, C.V., Brumbaugh, D.R., Micheli, F., Holmes, K.E., Dahlgren, C.P., Paris, C.B. and Blackwell, P.G.
2007	Journal Article	Progress in the use of remote sensing for coral reef biodiversity studies	Progress in Physical Geography v.31:421-434	Knudby, A., LeDrew, E. and Newman, C.
2007	Journal Article	Queensland researchers develop photo-mapping technique for benthic habitats.	Position Magazine v.31 October-November	Roelfsema, C.M. and Phinn, S.R
2007	Journal Article	Monsoonal bloom of phytoplankton in Luzon Strait with MODIS data.	Remote Sensing of Environment. v.109(4)443-450	Peñaflor, E.L. Villanoy, C.L., Liu, C.-T. and David, L.T.
2007	Product / Other	Tutorial for coastal ocean remote sensing using Bilko 3.2.	Presentation and Hands-on Tutorial Guide: The guide was developed, tested, and revised while conducting classes and workshops in remote sensing. It is currently being incorporated in workshops with local stakeholders for appreciation and implementation of RS-GIS in coastal management planning.	David, L.T., Peñaflor, E., Salamante, E., Ticzon, V. and Canto, R.F.
2007	Conference Paper	Integrating Satellite Image Data and Photo-Transects: Mapping Benthic Cover Types to Coral Reef Habitat Zones.	Proceedings of GEOHAB 2007: Marine Benthic Habitats of the Pacific and Other Oceans: Status, Use, and Management. Noumea, New Caledonia, May 2-6.	Phinn, S.R., Yang, S-Y., Roelfsema, C.M., Brady, K. and Mumby, P.J.
2007	Conference Paper	Mapping Benthic Habitats on Fijian Coral Reefs: Integrating Field and Remote Sensing Approaches	Proceedings of GEOHAB 2007: Marine Benthic Habitats of the Pacific and Other Oceans: Status, Use, and Management. Noumea, New Caledonia, May 2-6.	Phinn, S.R., Yang, S-Y., Roelfsema, C.M., Brady, K., and Mumby, P.J.
2007	Conference Paper	Measuring Structural Complexity on Coral Reefs	Proceedings of American Acadamy of Underwater Sciences	Knudby, A. and LeDrew, E.
2007	Electronic Resource (Web)	The Coastal Remote Sensing Toolkit - Coral Reef Mapping sections	www.gpa.uq.edu.au/CRSSIS/tools/rstoolkit/default.html www.gpa.uq.edu.au/CRSSIS/tools/rstoolkit/shallow-coral-bcm.html	Phinn, S.R. and Roelfsema, C.M.
2007	Journal Article	Coastal Aquatic Remote Sensing Applications for Environmental Monitoring and Management. Special Issue Editorial	Journal of Applied Remote Sensing	Brando, V.E. and Phinn, S.R.
2007	Product / Other	Presentation and Hands-on Tutorial Guide: Tutorial for Coastal Ocean Remote Sensing using Bilko 3.2	The guide was developed, tested, and revised while conducting classes and workshops in remote sensing. It is currently being incorporated in workshops with local stakeholders for appreciation and implementation of RS-GIS in coastal management planning.	Laura T. David, Eileen Peñaflor, Erlinda Salamante, Victor Ticzon, Robert Franklin Canto
2006	Conference Paper	Evaluation of benthic survey techniques for validating maps of coral reefs derived from remotely sensed images.	Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan, June 28-July 2, 2004. p1771-1780.	Roelfsema, C.M., Joyce, K. E. and Phinn, S.R
2006	Conference Paper	Mapping seagrass biomass with photo-library method.	Proceedings of the 13th Australasian Remote Sensing and Photogrammetry Conference, Canberra, 11-16 November, CD-Rom, Causal Publications.	Kutser, T., Vahtmäe, E. and Roelfsema, C.M.
2006	Conference Paper	Towards an understanding of patterns in high spatial resolution satellite images of coral reefs.	Eos Trans. American Geophysical Union. v.87(36) Ocean Sciences Meeting Supplement Abstract OS22N-02. [13th Ocean Sciences Meeting, February 20-24, Honolulu Convention Centre, Hawai’i.]	Brady, K., Phinn, S.R., and Mumby, P.J
2006	Conference Paper	Coastal zone remote sensing: understanding and managing dynamic and complex environments (a synthesis and toolkit?).	Proceedings of the 13h Australasian Remote Sensing and Photogrammetry Conference, Canberra, 11-16 November, CD-Rom, Causal Publications.	Phinn, S.
2006	Conference Paper	Mud, algae or seagrass: An assessment of remote sensing techniques for mapping inter-tidal seagrass cover and composition in turbid tropical environments.	Proceedings of the 13th Australasian Remote Sensing and Photogrammetry Conference, Canberra, 20-24 November, CD Rom, Causal Publications.	Phinn, S., Hough, S., Roelfsema, C., Anstee, J., Dekker, A., Wettle, M. and Daniels
2006	Conference Paper	Mapping seagrass (species composition, cover and above-ground biomass): a multi-sensor evaluation in Moreton Bay, Australia.	Eos Trans. American Geophysical Union. v.87(36) Ocean Sciences Meeting Supplement Abstract. [13th Ocean Sciences Meeting, February 20-24, Honolulu Convention Centre, Hawai’i.]	Phinn, S.R., Roelfsema, C.M. Dekker, A.G., Brando, V., Anstee, J. and Wettle, M.
2006	Conference Paper	Assessing the effects of multi spectral image processing and field validation survey approaches on the accuracy of seagrass maps in Moreton Bay Australia.	Proceedings of the 13th Ocean Sciences Meeting, February 20-24, Honolulu Convention Centre, Hawai’i.	Roelfsema, C.M., Dekker, A.G., Brando, V., Anstee, J. and Wettle, M.
0	Journal Article	Thermal Stress Pattern in the Coral Triangle		Eileen L. Peñaflor, William Skirving, Laura T. David
0	Journal Article	Automated Subsurface Coral Cover Counting with Area Calibration		Ma. Sheila Angeli Marcos, Laura T. David, Maricor Soriano
0	Journal Article	Utilizing Acoustic Data in Establishing a Relationship between Microhabitat Characteristics and Reef Fish Abundance		Victor Ticzon, Badi R. Samaniego, Greg Foster, Sonia Bejerano-Chavarro, Peter Mumby, Laura T. David
0	Journal Article	Temporal and Spatial Thermal Complexity of Philippine Waters		Zolah Botin, Ric del Rosario, Lael Perrot, Laura T. David
0	Journal Article	Assessing the effect of management zonation on live coral cover using multi-date IKONOS satellite imagery	Journal of Applied Remote Sensing	Newman, C.M., A.J. Knudby, E. LeDrew
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Restoration & Remediation ******

Year	Publicaton Type	Name of Article	Publication	Authors
2009	Product / Other	Konsep & Panduan Restorasi Terumbu: Membuat pilihan bijak di antara ketidakpastian. [Indonesian translation of Reef Restoration Concepts and Guidelines]	Coral Reef Targeted Research & Capacity Building for Management Program. St Lucia, Australia.	Edwards, A.J. and Gomez, E.D.
2008	Book	The underwater silviculture approach for reef restoration: an emergent aquaculture theme.	In Schwartz, Stephen H. (ed) Aquaculture Research Trends. Nova Science Publishers Inc, New York. 338p.	Shafir, S.and Rinkevich, B.
2008	Conference Paper	Coral transplantation in a degraded lagoon environment: differential results of three species.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-3]	Gomez, E., Cabaitan, P. and Yap, H.
2008	Conference Paper	Effects of coral transplantation and giant clam restocking on the functional groups of fish on degraded patch reefs.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-44]	Cabaitan, P., Gomez, E. and Alino, P.
2008	Conference Paper	Gardening Coral Reefs – New insights for coral reef restoration by using branching corals as ecosystem engineering species.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-2]	Horoszowski, Y., Brethes, J.-C. and Rinkevich, B.
2008	Conference Paper	How Quickly Do Coral-Fragments of Different Species ‘Self-Attach’ After Transplantation?	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-5]	Guest, J., Dizon, R., Franco, C., Edwards, A. and Gomez, E.
2008	Conference Paper	Survival, Growth, and Fecundity of Acropora muricata and Hydnophora rigida After Fragmentation and Transplantation.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-7]	Vicentuan, K., Guest, J., Aliño, P. and Heyward, A.
2008	Conference Paper	Species Specific Sensitivities of Transplanted Coral Fragments from Eleven Species to Predation and Bleaching.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-10]	Dizon, R., Guest, J., Gomez, E. and Edwards, A.
2008	Conference Paper	Implementing Acropora spp. larval settlement techniques and a coral hatchery system to gain insights into the survivorship of juvenile Acropora spp. polyps.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-23]	Boch, C. and Morse, A.
2008	Conference Paper	Comparisons between directly transplanted and nursery-reared coral fragments in Bolinao, Northwestern Philippines.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-26]	Dela Cruz, D., Rinkevich, B., Gomez, E. and Yap, H.
2008	Conference Paper	Natural and enhanced coral reef recovery after injury.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-46]	Moulding, A., Gilliam, D., Kosmynin, V. and Dodge, R.
2008	Conference Paper	Mass culture of reef building corals in open water at Akajima Marine Science Laboratory.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-21]	Omori, M., Iwao, K., Taniguchi, H. and Tamura, M.
2008	Conference Paper	Predicting patterns of coral spawning at multiple scales.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [11-20]	Baird, A. and Guest, J.
2008	Conference Paper	Recruitment of corals on standardized artificial substrata at two Indo-West Pacific locations	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24.1121]	Bollozos, I.S., Villanueva, R.and Edwards, A.
2008	Conference Paper	Spawning patterns of corals in Northwestern Philippines.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [11.390]	Vicentuan, K., Guest, J., Baria, M.V., Cabaitan, P., Dizon, R., Villanueva, R., Aliño, P., Edwards, A., Gomez, E. and Heyward, A.
2008	Conference Paper	A global assessment of the threat of extinction for reef-building corals.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18-49]	Carpenter, K., Abrar, M., Aeby, G., Aronson, R., Banks, S., Bruckner, A., Chiriboga, A., Cortés, J., Delbeek, J., DeVantier, L., Edgar, G., Edwards, A., Fenner, D., Guzmán, H., Hoeksema, B., Hodgson, G., Johan, O., Licuanan, W., Livingstone, S., Lovell, E., Moore, J., Obura, D., Ochavillo, D., Polidoro, B., Precht, W., Quibilan, M., Reboton, C., Richards, Z., Rogers, A., Sanciangco, J., Sheppard, A., Sheppard, C., Smith, J., Stuart, S., Turak, E., Weil, E., Wood, E. and Zebrowski, D.
2008	Conference Paper	Spatio-temporal patterns of coral recruitment in the Bolinao-Anda reef complex, Northwestern Philippines.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [10.295]	Baria, M.V., Aliño, P., Guest, J. and Heyward, A.
2008	Conference Paper	Coral reef restoration through the two stepped “coral gardening” concept.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24.1046]	Levy, G.
2008	Conference Paper	Mass culture of Acropora corals from eggs and larvae in the Republic of Palau.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24.1051]	Omori, M., Watanabe, K., Tamura, M., Taniguchi, H. and Kimura, T.
2008	Conference Paper	Coral reef restoration: standardized module intervention and monitoring program in Mexico, preliminary results.	11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24.1114]	Kilfoyle, K., Rangel, M.A., Dodge, R.E. and Spieler, R.E.
2008	Journal Article	Multi-species spawning of corals in north-western Philippines.	Coral Reefs. v.27(1)83	Vicentuan, K.C., Guest, J.R., Baria, M.V., Cabaitan, P.C., Dizon, R.M., Villanueva, R.D., Aliño, P.M., Edwards, A.J., Gomez, E.D. and Heyward, A.J.
2008	Journal Article	Comparison of three types of adhesives in attaching coral transplants to clam shell substrates.	Aquatic Conservation: Marine and Freshwater Ecosystems v.18(7)1140-1148	Dizon, R.M., Edwards, A.J. and Gomez, E.D.
2008	Journal Article	Fixed and suspended coral nurseries in the Philippines: Establishing the first step in the “gardening concept” of reef restoration	Journal of Experimental Marine Biology and Ecology v.358(1)86-97	Shaish, L., Levy, G., Gomez, E. and Rinkevich, B.
2008	Journal Article	Coral kin aggregations exhibit mixed allogeneic reactions and enhanced fitness during early ontogeny.	BMC Evolutionary Biology. v.8:126	Amar, K.O., Chadwick, N.E. and Rinkevich, B.
2008	Journal Article	A Drupella cornus outbreak in the northern Gulf of Eilat and changes in coral prey.	Coral Reefs. v.27(2)379	Shafir, S., Gur, O.and Rinkevich, B.
2008	Journal Article	Employing of the amplified fragment length polymorphism (AFLP) methodology as an efficient population genetic tool for symbiotic cnidarians.	Marine Biotechnology. v.10(4)350-357	Amar, K.O., Douek, J., Rabinowitz, C. and Rinkevich, B.
2008	Journal Article	Management of coral reefs: We have gone wrong when neglecting active reef restoration.	Marine Pollution Bulletin. v.56(11)1821-1824.	Rinkevich, B.
2008	Journal Article	One-third of reef-building corals face elevated extinction risk from climate change and local impacts.	Science. v.321 (5888) 560-563	Carpenter, K., Abrar, M,. Aeby, G., Aronson, R., Banks, S., Bruckner, A., Chiriboga, A., Cortés, J., Delbeek, J., DeVantier, L., Edgar, G., Edwards, A., Fenner, D, Guzmán, H., Hoeksema, B., Hodgson, G., Johan, O., Licuanan, W., Livingstone, S., Lovell, E., Moore, J., Obura, D., Ochavillo, D., Polidoro, B., Precht, W., Quibilan, M., Reboton, C., Richards, Z., Rogers, A., Sanciangco, J., Sheppard, A., Sheppard, C., Smith, J., Stuart, S., Turak, E., Weil, E., Wood, E. and Zebrowski, D.
2008	Journal Article	Growth of transplanted Acropora tenuis 2 years after egg culture	Coral Reefs. v.27(1)165	Omori, M., Iwao, K. and Tamura, M.
2008	Journal Article	Effects of coral transplantation and giant clam restocking on the structure of fish communities on degraded patch reef	Journal of Experimental Marine Biology and Ecology. v.357(1)85-98	Cabaitan, P.C., Gomez, E.D. and Aliño, P.M.
2008	Product / Other	Restauration Récifale Concepts & Recommandations : Faire des choix raisonnés de gestion dans un environnement indécis. [French translation of Reef Restoration Concepts and Guidelines]	Coral Reef Targeted Research & Capacity Building for Management Program. St Lucia, Australia.	Edwards, A.J. and Gomez, E.D.
2007	Book	Observed spawning records of 82 coral species in Palau.	In Kayanne H. et al. (eds) Coral Reefs of Palau. PICRC, Palau and JICA, Tokyo	Omori, M.
2007	Journal Article	Can dynamite-blasted reefs recover? A novel, low-tech approach to stimulating natural recovery in fish and coral populations.	Marine Pollution Bulletin v.54:1009-1019.	Raymundo, L.J., Maypa, A.P., Gomez, E.D. and Cadiz, P.
2007	Journal Article	How plastic can phenotypic plasticity be? The branching coral Stylophora pistillata as a model system.	PLoS ONE. v.2(7)e644.	Shaish, L., Abelson, A. and Rinkevich, B.
2007	Journal Article	A floating mid-water coral nursery as larval dispersion hub: testing an idea.	Marine Biology. v.151(2)713-718.	Amar, K.O. and Rinkevich, B.
2007	Product / Other	Reef Restoration Concepts and Guidelines: making sensible management choices in the face of uncertainty.	Coral Reef Targeted Research & Capacity Building for Management Program: St Lucia, Australia.	Edwards, A.J. and Gomez, E.D.
2006	Book	The coral gardening concept and the use of underwater nurseries: lessons learned from silvics and silviculture. Chapter 16.	In Precht, William F (ed). Coral Reef Restoration Handbook. CRC Press. 363p.	Rinkevich, B.
2006	Conference Paper	A mid-water coral nursery.	Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan, June 28-July 2, 2004. p1674-1679.	Shafir, S., van Rijn, J.and Rinkevich, B.
2006	Journal Article	Branch to colony trajectory in a modular organism: pattern formation in the Indo-Pacific coral Stylophora pistillata.	Developmental Dynamics v.235:2111-2121.	Shaish, L., Abelson, A.and Rinkevich, B.
2006	Journal Article	Steps in the construction of underwater coral nursery, an essential component in reef restoration acts.	Marine Biology. v.149(3)679-687.	Shafir, S., van Rijn, J. and Rinkevich, B.
2006	Journal Article	Coral nubbins as source material for coral biological research: A prospectus.	Aquaculture. v.259(1-4)444-448.	Shafir, S., van Rijn, J. and Rinkevich, B.
2006	Electronic Resource (Web)	Restoration project at Half Moon Bay.	CEA Electronic Communications, Edition 46. Akumal, Mexico. Centro Ecologico Akumal. http://www.ceakumal.org/cea_electronic_communications_edition_46.html
2006	Electronic Resource (Web)	Oceanographic student and professor deploy artificial reef modules in Mexico.	Sharkbytes. An online newsletter from Nova Southeastern University. http://www.nova.edu/cwis/pubaffairs/sharkbytes/2006/nov22/oceanographic.html
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