Peer Reviewed Publications

The CRTR Program’s Phase One research effort has contributed to more than 630 research publications

showcasing research results and outputs from December 2004 to November 2009.  For details, see CRTR Research Compendium:

Phase One (2004–2009)


Centre of Excellence - Australasia; Mesoamerica; East Africa; South East Asia
Working Groups - Bleaching; Connectivity; Disease; Modelling; Remote Sensing; Restoration

The following peer reviewed publications are produced by members of the CRTR Program through their involvement with the Program or through related research activities.

Publications are:
    i. attributed either directly to the CRTR Program; 
   ii. partially supported by the CRTR Program, or;
  iii. not supported directly by the Program however, the research has been influenced by the CRTR Program discussions,
       or the research has in turn influenced the CRTR Program’s research discussions

All papers are listed on this one page to allow you to use the search feature of your browser.

 Bleaching ******

Year Publicaton Type Name of Article Publication Authors
2008 Book Korallen als Ingenieure von Warm- und Kaltwasserriffen. Chapter 13. In Leinfelder, R. Heiss, G. and Moldrzyk, U. (eds.) "abgetaucht"- Begleitbuch zur Sonderausstellung zum internationalen Jahr des Riffes 2008. Museum für Naturkunde der Humboldt-Universität, Berlin. Pp.171-181. Wild, C. and Jantzen, C.
2008 Book Konsequenzen des Klimawandels für Korallenriffe – mögliche Lösungsansätze. Chapter 12. In Leinfelder, R. Heiss, G. and Moldrzyk, U. (eds.) "abgetaucht"- Begleitbuch zur Sonderausstellung zum internationalen Jahr des Riffes 2008. Museum für Naturkunde der Humboldt-Universität, Berlin. Pp.148-169. Wild, C., Jantzen, C., Niggl, W., Haas, A., Mayer, F. and Naumann, M.
2008 Book Consequences of coral bleaching for sessile reef organisms. Chapter 8. In van Oppen, M. and Lough, J. M. (eds) Coral Bleaching: Patterns, Processes, Causes and Consequences. Ecological Studies. V.205. Springer: Berlin. McClanahan, T. R., Weil, E., Cortes, J., Baird, A. and Ateweberhan, M.
2008 Book Effects of climate-induced coral bleaching on coral-reef fishes: ecological and economic consequences. In Gibson, R.N., Atkinson, R.J.A. and Gordon, J.D.M. (eds) Oceanography and Marine Biology: an Annual Review. v.46:251-296. Pratchett, M. S., Munday, C. N., Wilson, S. K., Graham, N. A., Cinner, J. E., Bellwood, D. R., Jones, G. P., Polunin, N. V. C. and McClanahan, T. R.
2008 Conference Paper Dynamic of the population size frequency distribution in 4 scleractinian coral species on Heron reef as a response to mild thermal stress. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [10.373] Juan Carlos Ortiz and Glen Holmes
2008 Conference Paper Managing fishing gear to encourage ecosystem-based management of coral reefs fisheries. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [22-17] McClanahan, T. R., Cinner, J., Maina, J., Ruiz Sebastian, C., Wilson, S. and Graham, N.
2008 Conference Paper Antioxidant activity of extracts and secondary metabolites from Pseudopterogorgia sps. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [9-16] Mukherjee, M., West, L., Lasker, H., Schmidt, G. and Fitt, W.
2008 Conference Paper Micro-niche partitioning and the photobiology of Symbiodinium associated with Montastraea faveolata. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [5.138] Kemp, D., Hernandez-Pech, X., Iglesias-Prieto, R., Schmidt, G. and Fitt, W.
2008 Conference Paper Bleaching, El Nino, and El Nina: 13 years of seasonal analysis of reef-building corals in Florida, the Bahamas, and the Caribbean. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [25-37] Fitt, W., Kemp, D., Hernandez-Pech, X., Iglesias-Prieto, R., Thornhill, D., Bruns, B. and Schmidt,G.
2008 Conference Paper Coral reef bleaching events, microbial communities and climate change. ‘Hot Topics’ symposium on Influence of climate change on disease and microbial environmental processes. Society for General Microbiology 162nd meeting, Edinburgh, 2 April 2008. Bythell, J.C.
2008 Journal Article Analytical approach for selecting normalizing genes from a cDNA microarray platform to be used in q-RT-PCR assays: A cnidarian case study. Journal of Biochemical & Biophysical Methods. V.70(6)985-991. Rodriguez-Lanetty, M., Phillips, W.S., Dove, S., Hoegh-Guldberg, O. and Weis, V.
2008 Journal Article Genetic connectivity patterns of Pocillopora verrucosa in southern African Marine Protected Areas. Marine Ecology. Progress Series. (MEPS). v.354:161-168. Ridgway, T., Riginos, C., Davis, J. and Hoegh-Guldberg, O.
2008 Journal Article Microbes enriched in seawater after addition of coral mucus. Applied & Environmental Microbiology. v.74(10)3274-3278. Allers, E., Niesner, C., Wild, C. and Pernthaler, J.
2008 Journal Article Vectored introductions of marine endosymbiotic dinoflagellates into Hawaii. Biological Invasions. V.10:579-583. Stat, M. and Gates, R. D
2008 Journal Article Acclimatization in tropical reefs corals. Marine Ecology. Progress Series. (MEPS). v.361:307-310. Edmunds, P. J. and Gates, R. D
2008 Journal Article Diversity in populations of free-living Symbiodinium from a Caribbean and Pacific reef. Limnology and Oceanography. v.53(5)1853-1861. Manning, M. M. and Gates, R. D
2008 Journal Article Functional diversity in coral-dinoflagellate symbiosis. Proceedings of the National Academy of Science (PNAS). v.105(27)9256-9261. Stat, M., Morris, E. and Gates, R. D.
2008 Journal Article Ecological size-frequency distributions: how to prevent and correct biases in spatial sampling. Limnology & Oceanography: Methods. V.6:144-152. Zvuloni, A., Artzy-Randrup, Y., Stone, L., van Woesik, R. and Loya, Y.
2008 Journal Article Bleaching increases likelihood of disease on Acropora palmata (Lamarck) in Hawksnest Bay, St. John, US Virgin Islands. Coral Reefs. v.27(1)191-195. Muller, E.M., Rogers, C.S., Spitzack, A.S. and van Woesik, R.
2008 Journal Article Using three-dimensional surface area to compare the growth of two Pocilloporid coral species. Marine Biology.v.155:421-427. Holmes, G., Ortiz, J., Kaniewska, P. and Johnstone, R.
2008 Journal Article Phototrophic adjustment of the foliaceous coral Echinopora lamellosa in Palau. Estuarine, Coastal and Shelf Science. v.77(4)672-678. Iwase A., Sakai, K. Suzuki, A. van Woesik, R.
2008 Journal Article Local scale genetic structure in coral populations: A signature of selection. Marine Pollution Bulletin. v.56:430-438 Zvuloni, A., Mokady, O., Al-Zibdah, M., Bernardi, G., Gaines, S.D. and Abelson, A.
2008 Journal Article Structural deformation of branching corals associated with the vermetid gastropod Dendropoma maxima. Marine Ecology. Progress Series. (MEPS). v.363:103-108. Zvuloni, A., Armoza-Zvuloni, R. and Loya, Y.
2008 Journal Article Dynamics of shallow-water assemblages in the Saipan Lagoon Marine Ecology. Progress Series. (MEPS). v.356:39-50. Houk, P. and van Woesik, R.
2008 Journal Article Conservation action in a changing climate. Conservation Letters. v.1:53-59. McClanahan, T. R., Cinner, J. E., Maina, J., Graham, N. A. J., Daw T. M., Stead, S. M., Wamukota, A., Brown, K., Ateweberhan, M., Venus, V. and Polunin, N. V. C.
2008 Journal Article Modelling susceptibility of coral reefs to environmental stress using remote sensing data and GIS models. Ecological Modelling. V.212:180-199. Maina, J., Venus, V., McClanahan, T. R. and Ateweberhan, M.
2008 Journal Article Long-term changes in coral colony size distributions on Kenyan reefs under different management regimes and across the 1998 bleaching event. Marine Biology. v.153:755-768. McClanahan, T. R., Ateweberhan, M. and Omukoto, J.
2008 Journal Article Meso-scale modelling of coral's susceptibility to environmental stress using remotely sensed data: Reply to comments by Dunne (2008). Ecological Modelling. V.218:192-194. Maina, J., McClanahan, T. R, and Venus, V.
2008 Journal Article Specificity and stability in high latitude eastern Pacific coral-algal symbioses. Limnology and Oceanography. v.53(2)719-727. LaJeunesse, T.C., Reyes Bonilla, H., Warner, M.E., Wills, M., Schmidt, G.W. and Fitt, W.K.
2008 Journal Article Correspondence between cold tolerance and temperate biogeography in Western Atlantic Symbiodinium (Dinophyta) lineage. Journal of Phycology. v.44:1126-1135. Thornhill, D.J., Kemp, D.W., Bruns, B.U., Fitt ,W.K. and Schmidt, G.W.
2008 Journal Article Enhanced photoprotection pathways in symbiotic dinoflagellates of shallow-water corals and other cnidarians. Proceedings of the National Academy of Science (PNAS). v.105(36)13674-13678. Reynolds, J.C.M., Bruns, B.U., Fitt, W.K. and Schmidt, G.W.
2008 Journal Article A precise and non-destructive method to calculate the surface area in living scleractinian corals using X-ray computed tomography and 3D modeling. Coral Reefs. v.27:811-820. Laforsch, C., Christoph, E,. Glaser, C., Naumann, M., Wild, C. and Niggl, W.
2008 Journal Article Photosynthetic performance of giant clams, Tridacna maxima and T. squamosa, Red Sea. Marine Biology. v.155(2)211-221. Jantzen, C., Wild, C., el-Zibdah, M., Roa-Quiaoit, H.A., Haacke, C. and Richter, C.
2008 Journal Article Biogeochemical responses following coral mass spawning on the Great Barrier Reef: pelagic-benthic coupling. Coral Reefs. v.27(1)123-132. Wild, C., Jantzen, C., Struck, U., Hoegh-Guldberg, O. and Huettel, M.
2008 Journal Article High rates of nitrogen fixation (acetylene reduction) on coral skeletons following bleaching mortality. Coral Reefs. v.27:227-236. Davey, M., Holmes, G. and Johnstone, R.
2007 Book/Conference Paper Coral reef texture classification using support vector machines. In Ranchordas, A., Araujo, H. and Vitria, J. (eds) VISAPP 2007: Proceedings of 2nd International Conference on Computer Vision Theory and Applications, Barcelona, Spain. v. 2 pp302-310. Mehta, A., Ribeiro, E., Gilner, J. and van Woesik, R.
2007 Book Climate change and Australian marine life. Chapter 8. Oceanography and Marine Biology: An Annual Review. v.45:407-478. Poloczanska, E.S., Babcock, R., Butler, A., Hobday, A.J., Hoegh-Guldberg, O., Kunz, T.J. Matear, R., Milton, D.A., Okey, T.A. and Richardson, A.J.
2007 Journal Article Coral reef bleaching and global climate change: Can corals survive the next century? Proceedings of the National Academy of Science (PNAS). v.104(13)5259-5260. Lesser, M. P.
2007 Journal Article Bleaching, energetics and coral mortality risk: effects of temperature, light and sediment regime. Limnology and Oceanography. v.52(2)716-726. Anthony, K.R.N., Connolly, S.R. and Hoegh-Guldberg, O.
2007 Journal Article Comment on "Modern-age buildup of CO2 and its effects on seawater acidity and salinity" by Hugo A. Loaiciga Geophysical Research Letters. v.34:L18608. Caldeira, K., Archer, D., Barry, J. P., Bellerby, R.G.J., Brewer, P.G., Cao, L., Dickson, A.G., Doney, S. C., Elderfield, H., Fabry, V. J., Feely, R. A., Gattuso, J.-P., Haugan, P.M., Hoegh-Guldberg, O., Jain, A. K., Kleypas, J. A., Langdon, C., Orr, J. C., Ridgwell, A., Sabine, C. L., Seibel, B. A., Shirayama, Y., Turley, C., Watson, A. and Zeebe, R. E.
2007 Journal Article Predominance of clade D Symbiodinium in shallow-water reef-building corals off Kish and Larak Islands (Persian Gulf, Iran). Marine Biology. v..153(1)25-34. Mostafavi, P.G., Fatemi, S.M.R., Shahosseiny, M.H., Hoegh-Guldberg, O. and Loh, W.K.W.
2007 Journal Article Acquisition of symbiotic dinoflagellates (Symbiodinium) by juveniles of the coral Acropora longicyathus. Coral Reefs. v.27(1)219-226. Gomez Cabrera, M. del C; Ortiz, J. C., Loh, W. K.W., Ward, S. and Hoegh-Guldberg, O.
2007 Journal Article Phase shifts, herbivory and the resilience of coral reefs to climate change. Current Biology. v.17(4)360-365. Hughes, T.P., Rodriques, M J., Bellwood, D.R., Ceccarelli, D., Hoegh-Guldberg, O., McCook, L., Moltschaniwskyj, N. and Pratchet, M. S.
2007 Journal Article Spring "bleaching" among Pocillopora in the Sea of Cortez, Eastern Pacific. Coral Reefs. v.26(2)265-270. LaJeunesse, T.C., Reyes-Bonilla, H. and Warner, M. E.
2007 Journal Article Analysis of an EST library from the dinoflagellate (Symbiodinium sp.) symbiont of reef-building corals. Journal of Phycology. v.43(5)1010-1021. Leggat, W., Hoegh-Guldberg, O., Dove, S. and Yellowlees, D.
2007 Journal Article Disease and cell death in White Syndrome of Acroporid corals on the Great Barrier Reef. Marine Biology. v.151(1) 19-29. Ainsworth, T.D., Kvennefors, E.C., Blackall, L., Fine, M. and Hoegh-Guldberg, O.
2007 Journal Article Spatial heterogeneity of photosynthetic activity of dinoflagellate symbionts within diseased corals from the Great Barrier Reef. Journal of Phycology. v.44(2)526-538. Roff, G., Ulstrup, K. A., Fine, M., Ralph, P. J. and Hoegh-Guldberg, O.
2007 Journal Article A world with corals: What will it take? Science. v.318:5847. Schuttenberg, H. and Hoegh-Guldberg, O.
2007 Journal Article The effects of short-term exposures to ultraviolet radiation in the Hawaiian coral, Montipora verrucosa. Journal of Experimental Marine Biology and Ecology. v.340(2)194-203. Torregiani, J. H. and Lesser, M. P.
2007 Journal Article Resilience and acclimation to bleaching stressors in the scleractinian coral Porites cylindrica. Journal of Experimental Marine Biology and Ecology. v.349(1)35-44. Visram, S. and Douglas, A.E.
2007 Journal Article Increased prevalence of ubiquitous Ascomycetes in an Acropoid coral (Acropora formosa) exhibiting symptoms of brown band syndrome and skeletal eroding band disease. Applied and Environmental Microbiology. v.73(8)526-538. Yarden, O., Ainsworth, T. D., Roff, G., Leggat, W., Fine, M. and Hoegh-Guldberg, O.
2007 Journal Article Palau’s coral reefs show differential habitat recovery following the 1998-bleaching event. Coral Reefs. v.26(2)319-332. Golbuu, Y., Victor, S., Penland, L., Idip, D., Emaurois, C., Okaji, K., Yukihira, H., Iwase, A. and van Woesik, R.
2007 Journal Article The transition zone chlorophyll front can trigger Acanthaster planci outbreaks in the Pacific Ocean: historical confirmation. Journal of Oceanography. v.63(1)149-154. Houk, P., Bograd, S. and van Woesik, R.
2007 Journal Article Effects of climate and seawater temperature variation on coral bleaching and mortality. Ecological Monographs. v.77(4)503-525. McClanahan, T. R., Ateweberhan, M., Muhando, C., Maina, J. and Mohammed, S. M.
2007 Journal Article Predictability of coral bleaching from synoptic satellite and in situ temperature observations. Coral Reefs. v.26(3)695-701. McClanahan, T. R., Ateweberhan, M., Ruiz Sebastian, C., Graham, N. A. J., Wilson, S. K., Bruggemann, J. H. and Guillaume, M. M. M.
2007 Journal Article Western Indian Ocean coral communities: bleaching responses and susceptibility to extinction. Marine Ecology. Progress Series. (MEPS). v.337:1-13. McClanahan, T. R., Ateweberhan, M., Graham, N. A. J., Wilson, S. K., Ruiz Sebastian, C., Guillaume, M. M. M. and Bruggemann, J. H.
2007 Journal Article Microsatellites from clade B Symbiodinium spp. specialized for Caribbean corals in the genus Madracis. Molecular Ecology Notes. V.7:1271-1274. Pettay, D.T. and LaJeunesse, T.C.
2007 Journal Article The hologenome theory disregards the coral holobiont. Reply to Rosenberg et al. Nature Reviews: Microbiology. v.5(10)doi:10.1038/nrmicro1635-c1 Leggat,W., Ainsworth, T., Bythell, J., Dove, S., Gates, R., Hoegh-Guldberg, O., Iglesias-Prieto, R. and Yellowlees, D.
2007 Journal Article Effects of artificial settlement plate materials and methods of deployment on the sessile epibenthic community development in a tropical environment. Coral Reefs.v.26(2)279-289. Field, S.N., Glassom, D. and Bythell, J.C.
2007 Journal Article Phase shifts and the role of herbivory in the resilience of coral reefs. Coral Reefs v.26(3)641-653. Ledlie, M.H., Graham, N.A.J., Bythell, J.C., Wilson, S.K., Jennings, S., Polunin, N.V.C. and Hardcastle, J.
2007 Journal Article Are infectious diseases really killing corals? Alternative interpretations of the experimental and ecological data. Journal of Experimental Marine Biology & Ecology. v.356(1-2)36-44 Lesser, M.P., Bythell, J.C., Gates, R.D., Johnstone, R.W. and Hoegh-Guldberg, O.
2007 Journal Article Coral reefs under rapid climate change and ocean acidification. Science. v.318:1737-1742. Hoegh-Guldberg, O., Mumby, P.J., Hooten, A. J., Steneck, R.S., Greenfield, P., Gomez, E., Harvell D. R, Sale, P.F., Edwards, A.J., Caldeira, K., Knowlton, N., Eakin, C. M., Iglesias-Prieto, R., Muthiga, N., Bradbury, R.H., Dubi, A., and Hatziolos, M. E.
2007 Journal Article Light-responsive cryptochromes from a simple multicellular animal, the coral Acropora millepora. Science. v.318:467-470. Levy, O., Appelbaum, L., Leggat, W., Gothlif, Y., Miller, D. J. and Hoegh-Guldberg, O.
2007 Journal Article Acclimation effect on fatty acids of the coral Montipora digitata and its symbiotic algae. Comparative Biochemistry and Physiology. Part B. v.146(4)583-589. Papina, M., Meziane, T. and van Woesik, R.
2007 Journal Article Bathymetry, water optical properties, and benthic classification of coral reefs using hyperspectral remote sensing imagery. Coral Reefs. v.26:819-829. Lesser, M. P. and Mobley, C.
2007 Journal Article Coral disease diagnostics: what’s between a plague and a band? Applied & Environmental Microbiology. v.73(3)981-992. Ainsworth, T.D., Kramasky–Winter, E., Loya, Y., Hoegh-Guldberg, O. and Fine, M.
2007 Journal Article Nitrogen fixation by symbiotic Cyanobacteria provides a source of nitrogen for the Scleractinian coral Montastraea cavernosa. Marine Ecology. Progress Series. (MEPS). v.346:143-152. Lesser, M. P., Falcón, L. I., Rodríguez-Román, A., Enríquez, S., Hoegh-Guldberg, O. and Iglesias-Prieto, R.
2007 Journal Article Niche partitioning of closely related symbiotic dinoflagellates. Molecular Ecology.v.16(17)3721-3733. Sampayo, E., Franceschietis, L., Hoegh-Guldberg, O. and Dove, S.
2007 Journal Article Phage therapy of coral disease. Coral Reefs. v.26(1)7-13. Efrony, R., Loya, Y., Bacharach, E. and Rosenberg, E.
2006 Book A coral population response (CPR) model for thermal stress. In Phinney, J.T. et al (eds) Coral reefs and climate change: science and management. Coastal and Estuarine Studies v.61. van Woesik, R. and Koksal, S.
2006 Journal Article Annual cycles of solar insolation predict spawning times of Caribbean corals. Ecology Letters. v.9:390-398. van Woesik, R., Lacharmoise, F. and Koksal, S.
2006 Journal Article Detection and enumeration of microbial cells within highly porous calcareous reef sands. Marine and Freshwater Research. v.57(4)415-420. Wild, C., Laforsch, C. and Huettel, M.
2006 Journal Article Benthic oxygen consumption and organic matter turnover in organic-poor, permeable shelf sands. Aquatic Geochemistry. v.12(10)1-19. Rusch, A., Huettel, M., Wild, C. and Reimers, C.E.
2006 Journal Article Spatial patterns of aerobic and anaerobic mineralization rates and oxygen penetration dynamics in coral reef sediments. Marine Ecology. Progress Series (MEPS). V.309:93-105. Werner, U., Bird, P., Wild, C., Ferdelman, T., Polerecky, L., Eickert, G., Johnstone, R., Hoegh-Guldberg, O. and de Beer, D.
2006 Journal Article Environmental effects on bacterial diversity in the surface mucus layer of the reef coral Montastraea faveolata. Marine Ecology. Progress Series (MEPS). V.328:133-142. Guppy, R. and Bythell, J.C.
2006 Journal Article Oxidative Stress in Marine Environments: Biochemistry and Physiological Ecology. Annual Review of Physiology. V.68:253-278. Lesser, M. P.
2006 Journal Article Conservation genetics and the resilience of reef-building corals. Molecular Ecology. v.15:3863-3883. van Oppen, M. J. H. and Gates, R. D.
2006 Journal Article Intra-colonial response to Acroporid ‘‘white syndrome’’ lesions in tabular Acropora spp. (Scleractinia). Coral Reefs. v.25(2)255-264. Roff, G., Hoegh-Guldberg, O. and Fine, M.
2006 Journal Article Increased mortality and photoinhibition in the symbiotic dinoflagellates of the Indo-Pacific coral Stylophora pistillata (Esper) after summer bleaching Marine Biology. v.149(3)633-642. Franklin, D.J., Cedres, C. M. M. and Hoegh-Guldberg, O.
2006 Journal Article Monitoring coral bleaching using a colour reference card. Coral Reefs. v.25(3)453-460. Siebeck, U.E., Marshall, N. J., Klüter, A. and Hoegh-Guldberg, O.
2006 Journal Article Response of holosymbiont pigments from the scleractinian coral Montipora monasteriata to short-term heat stress Limnology and Oceanography. v.51(2)1149-1158. Dove, S., Ortiz, J.C., Enriquez, S., Fine, M., Fisher, P., Iglesias-Prieto, R., Thornhill, D. and Hoegh-Guldberg, O.
2006 Journal Article Multi-year, seasonal genotypic surveys of coral-algal symbioses reveal prevalent stability or post-bleaching reversion Marine Biology. v.148(6)711-722. Thornhill, D.J., La Jeunesse, T.C., Kemp, D.W., Fitt, W.K. and Schmidt, G.W.
2006 Journal Article Indirect effects of algae on coral: algae-mediated, microbe-induced coral mortality Ecology Letters. v.9(7)835-845. Smith, J.E., Shaw, M., Edwards, R.A., Obura, D., Pantos, O., Sala, E., Sandin, S.A., Smriga, S., Hatay, M. and Rohwer, L.
2006 Journal Article Long-term effects of the 1998 coral bleaching event on reef fish assemblages. Marine Ecology. Progress Series (MEPS). V.315:237-247. Garpe, K.C., Yahya, S.A.S., Lindahl, U. and Ohman, M.C.
2006 Journal Article Fluorescence in situ hybridisation and spectral imaging of coral-associated bacterial communities. Applied and Environmental Microbiology. v.72(4)3016-3020. Ainsworth, T.D., Fine, M., Blackall, L. and Hoegh-Guldberg, O.
2006 Journal Article Energy integration between the solitary polyps of the clonal coral Lobophyllia corymbosa. Journal of Experimental Biology. v.209(9)1690-1695. Brickner, I., Frank, U., Oren, U. and Loya, Y.
2006 Journal Article Ultraviolet radiation effects on the behavior and recruitment of larvae from the reef coral Porites astreoides. Marine Biology. v.148(3)503-512. Gleason, D.F., Edmunds, P. J. and Gates, R. D.
2006 Journal Article Viruses: Agents of coral disease? Diseases of Aquatic Organisms. v.69(1)101-110. Davy, S.K., Burchett, S.G., Dale, A.L., Davies, P., Davy, J.E., Muncke, C., Hoegh-Guldberg, O. and Wilson, W. H.
2006 Journal Article Phototrophic microendoliths bloom during coral "White Syndrome". Coral Reefs. v.25(4)577-581. Fine, M., Roff, G., Ainsworth, T.D. and Hoegh-Guldberg, O.
2006 Journal Article [Perspective] The complexities of coral reef recovery. Science. v.311:42-43. Hoegh-Guldberg, O.
2006 Journal Article Impact of the 1998 bleaching event on δ180 records of Okinawa corals. Marine Ecology. Progress Series. (MEPS). v.314:127-133. Rosenfeld, M., Shemesh, A., Yam, R. and Loya, Y.
2006 Journal Article Population dynamics of zooxanthellae during a bacterial bleaching event. Coral Reefs. v.25:223-227. Shenkar, N., Fine, M., Winter, E. K. and Loya, Y.
2006 Journal Article Identification of a protist-coral association and its possible ecological role. Marine Ecology. Progress Series. (MEPS). v.317:67-73. Kramarsky-Winter, E., Harel, M., Siboni, N., Ben Dov, E., Brickner, I., Loya, Y. and Kushmaro, A.
2006 Journal Article Natural infections of aposymbiotic Cassiopea xamachana scyphistomae from environmental pools of Symbiodinium. Journal of Experimental Marine Biology & Ecology.v.338(1)50-56. Thornhill, D. J., Daniel, M.W., LaJeunesse, T.C., Bruns, B.U., Schmidt, G.W. and Fitt, W.K.
2006 Journal Article Patterns of inorganic phosphate uptake in Cassiopea xamachana: a bioindicator species. Marine Pollution Bulletin. v.52(5)515-521. Todd, B.D., Thornhill, D.J. and Fitt, W.K.
2006 Journal Article The 2.1Å crystal structure of copGFP, a representative member of the Copepod clade within the Green Fluorescent Protein superfamily. Journal of Molecular Biology. v.359(4)890-900. Wilmann, P., Battad, J., Petersen, J., Wilce, M., Dove, S., Devenish, R., Prescott, M. and Rossjohn, J.
2006 Journal Article The 2.0Å crystal structure of a pocilloporin at pH 3.5: the structural basis for pH dependent colour transitions and their linkage to the binding of halides. Photochemistry and Photobiology. v.82(2)359-366. Wilmann, P., Battad, J., Beddoe, T., Olsen, S., Smith, S., Dove, S., Devenish, R., Rossjohn, J. and Prescott, M.
2006 Journal Article The evolutionary history of Symbiodinium and scleractinian hosts—Symbiosis, diversity, and the effect of climate change. Perspectives in Plant Ecology, Evolution and Systematics. v.8(1)23-43. Stat, M., Carter, D. and Hoegh-Guldberg, O.
2006 Journal Article Photosynthesis and light utilization in the Caribbean coral Montastraea faveolata recovering from a bleaching event. Limnology and Oceanography. v.51(6)2702-2710. Rodríguez-Román, A., Hernández-Pech, X., Thomé, P. E., Enríquez, S. and Iglesias-Prieto, R.
2006 Journal Article Aerial exposure influences bleaching patterns. Coral Reefs. v.25(3) 452 Leggat, W., Ainsworth, T.D., Dove, S.G. and Hoegh-Guldberg, O.
2006 Journal Article Antimicrobial activity of Red Sea corals. Marine Biology. v.149(2)357-363. Kelman, D., Kashman, Y., Rosenberg, E., Kushmaro, A. and Loya, Y.
2006 Journal Article Bacterial community structure associated with white band disease in the elkhorn coral Acropora palmata determined using culture-independent 16S rRNA techniques Disease of Aquatic Organisms. v.69(1)79-88. Pantos, O. and Bythell, J.C.
2006 Journal Article Amino acid substitutions around the chromophore of the chromoprotein Rtms5 influence polypeptide cleavage. Biochemical and Biophysical Research Communications. V..340(4)1139-1143. Turcic, K., Pettikiriarachchi, A., Battad, J., Devenish, R., Willmann, P., Dove, S. and Prescott, M.
2006 Product / Other Ocean acidification due to increasing atmospheric carbon dioxide Royal Society (Policy Document) 12/05:68. Raven, J., Caldeira, K., Elderfield, H., Hoegh-Guldberg, O., Liss, P., Riebesell, U., Shepherd, J., Turley, C. and Watson, A.
2005 Journal Article Low coral cover in a high-CO2 world. Journal of Geophysical Research. v.110:C09S06 Hoegh-Guldberg, O.
2005 Journal Article Perspectives on mucus secretion in corals. Marine Ecology Progress Series (MEPS).v.296:291-309 Brown, B.E. and Bythell J.C.
2005 Journal Article Global assessment of coral bleaching and required rates of adaptation under climate change. Global Change Biology. v.11(12)2251-2265. Donner, S.D., Skirving, W.J., Little, C.M., Oppenheimer, M. and Hoegh-Guldberg, O.
2005 Journal Article Tolerance of endolithic algae to elevated temperature and light in the coral Montipora monasteriata from the southern Great Barrier Reef. Journal of Experimental Biology. v.208(1)75-81. Fine, M., Meroz-Fine, M.E. and Hoegh-Guldberg, O.
2005 Journal Article Swimming against the flow. Science. v.308:860-862. Genin, A., Jaffe, J., Reef, R., Ricther, R. and Franks, J.
2005 Journal Article Coral bleaching following wintry weather. Limnology and Oceanography. v.50(1)265-271. Hoegh-Guldberg, O., Fine, M., Skirving, W., Johnstone, R., Dove, S. and Strong, A.E.
2005 Journal Article Comment on "Coral reef calcification and climate change: The effect of ocean warming". Response to McNeil et al. 2004. Geophysical Research Letters. v.32:L08601. Kleypas, J. A., Buddemeier, R.W., Eakin, M., Gattuso, J-P, Guinotte, J., Hoegh-Guldberg, O., Iglesias-Prieto, R., Jokiel, P., Langdon, C., Skirving, W. and Strong, A.E.
2005 Journal Article The effect of temperature on the size and population density of dinoflagellates in larvae from the reef coral Porites astreoides. Invertebrate Biology.v.124(3)185-193. Edmunds, P.J., Gates, R.D., Leggat, W. and Hoegh-Guldberg, O.
2005 Journal Article A novel carbonic anhydrase from the giant clam Tridacna gigas contains two carbonic anhydrase domains. Federations of European Biochemical Sciences Journal (FEBS) v.272(13)3297-3305. Leggat, W., Dixon, R., Saleh, S. and Yellowlees, D.

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Connectivity ******

Year Publicaton Type Name of Article Publication Authors
2009 Journal Article Tracing Particulates from Produced Water. In: Lee, K. & Neff, J. (eds) Produced Water: Environmental Risks and Advances in Mitigation Technologies. Springer. [in review] Ruddick, B. and Taggart, C.
2009 Journal Article Larval dispersal and marine population connectivity. Annual Reviews in Marine Science v.1:443-466 Cowen, R.K. and Sponaugle, S.
2009 Journal Article Genetic structure of juvenile cohorts of bicolor damselfish (Stegastes partitus) along the Mesoamerican barrier reef: chaos through time. Coral Reefs v.28 (1) 277-288 Hepburn, R.I., Sale, P., Dixon, B. and Heath, D.D.
2008 Book Coral bleaching and consequences for motile reef organisms: past, present and uncertain future. Chapter 9. In van Oppen, M. and Lough, J. (eds). Coral Bleaching: Patterns, Processes, Causes and Consequences. Ecological Studies. v.205. Berlin:Springer. Pp.139-158. Pratchett, M.S., Wilson, S.K., Graham, N.A.J., Munday, P.L., Jones, G.P. and Polunin, N.V.C
2008 Conference Paper Connectivity and resilience of coral reef metapopulations in MPAs: matching empirical efforts to predictive needs. 89th Annual Meeting of Western Society of Naturalists, 6-9 November 2008. Vancouver, Canada. White, J.W., Botsford, L.W., Coffroth, M.A., Paris, C., Planes, S., Shearer, T.L., Thorrold, S. and Jones, G.P.
2008 Journal Article Connectivity: What it is, how it is measured, and why it is important for management of reef fishes. Procs of 59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize, 2006. National Marine Sanctuaries Series ONMS-08-07. Sale, P. F. and Kritzner, J.P.
2008 Journal Article The complete development of larval Caribbean spiny lobster Panulirus argus (Latreille, 1804) in culture. Journal of Crustacean Biology. v.28(2)306-327. Goldstein, J.S., Matsuda, H., Takenouchi, T. and Butler IV, M.J.
2008 Journal Article River-reef connectivity in the Mesoamerican region. Coral Reefs. v.27:773-781. Paris, C.B. and Cherubin, L.M.
2008 Journal Article A global baseline for spawning aggregations of reef fishes. Conservation Biology. v.22(5)1233-1244. Sadovy de Mitcheson, Y., Cornish, A., Domeier, M., Colin, P. L., Russell, M., and Lindeman, K.C
2008 Journal Article Coral reef management and conservation in the light of rapidly evolving ecological paradigms. Trends in Ecology and Evolution. V.23(10)555-563. Mumby, P.J. and Steneck, R.S.
2008 Journal Article Ocean circulation and terrestrial runoff dynamics in the Mesoamerican region from spectral optimization of SeaWiFS data and a high resolution simulation. Coral Reefs. v.27:503-519. Cherubin, L.M., Kuchinke, C. and Paris, C.B.
2008 Journal Article Advantages of using crest nets to sample pre-settlement larvae of reef fishes in the Caribbean Sea. Fishery Bulletin. v.106(2) 213-221. Nolan, C.J. and Danilowicz, B.S.
2008 Journal Article Effects of climate-induced coral bleaching on coral-reef fishes — ecological and economic consequences. Oceanography and Marine Biology: An Annual Review. v.46:251-296. Pratchett, M.S., Munday, P.L., Wilson, S.K., Graham, N.A.J., Cinner, J.E., Bellwood, D.R., Jones, G.P. Polunin, N.V.C. and McClanahan, T.R.
2008 Journal Article Management of coral reefs: Where we have gone wrong and what we can do about it. Marine Pollution Bulletin. v.56(5)805-809. Sale, P.F.
2008 Journal Article Segregation of Queen conch, Strombus gigas, populations from the Yucatan peninsula, Mexico. Procs of 59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize, 2006. National Marine Sanctuaries Series ONMS-08-07. pp71-88. Paris, C.B., Perez Perez, M., Kool, J. and Aldana Aranda, D.
2008 Journal Article Barcoding corals: limited by interspecific divergence, not intraspecific variation. Molecular Ecology Resources. V.8:247-255. Shearer, T.L and Coffroth, M.A
2008 Journal Article Theme section on “Larval connectivity, resilience and the future of coral reefs”. Coral Reefs [Online] Jones, G.P., Russ, G.D., Sale, P.F. and Steneck, R.S.
2008 Product / Other Stemming Decline of the Coastal Ocean: Rethinking Environmental Management. United Nations University, International Network on Water, Environment and Health (UNU-INWEH) Policy Brief. Hamilton, Canada. Sale, P.F., Butler IV, M.J., Hooten, A.J., Kritzer, J.P., Lindeman, K.C., Sadovy de Mitcheson, Y.J., Steneck, R.S. and van Lavieren, H.
2008 Product / Other Marine protected areas. Chapter 8. In Julius, S.H. and West, J.M. (eds). Adaptation options for climate-sensitive ecosystems and resources. Synthesis and assessment product 4.4, Washington, DC: U.S. Climate Change Science Program. Keller, B.D., Airamé, S., Causey, B., Friedlander, A., Gleason, D.F., Grober-Dunsmore, R., Johnson, J., McLeod, E., Miller, S.L., Steneck, R S. and Woodley, C.
2007 Book Calcified Algae. In Denny, M.W. and Gaines, S.D. (eds) Encyclopedia of Tidepools and Rocky Shores. Encyclopedias of the Natural World 1. Berkeley: University of California Press. Steneck, R.S. and Martone, P.
2007 Book Vulnerability of fishes of the Great Barrier Reef to climate change. [Chapter 12] In Johnson, J. and Marshall, P. (eds) Climate Change and the Great Barrier Reef: A vulnerability assessment. Townsville: Great Barrier Reef Marine Park Authority. pp357-392. Munday, P.L., Jones, G.P., Sheaves, M., Williams, A.J. and Goby, G.
2007 Journal Article Adaptive management of the Great Barrier Reef and the Grand Canyon World Heritage Areas. Ambio: a Journal of the Human Environment. V.36(7)586-592. Hughes, T.P., Gunderson, L. H., Folke, C., Baird, A. H., Bellwood, D., Berkes, F., Crona, B., Helfgott, A., Leslie, H., Norberg, J., Nyström, M., Olsson, P., Österblom, H., Scheffer, M., Schuttenberg, H., Steneck, R.S., Tengö, M., Troell, M., Walker, B., Wilson, J. and Worm B.
2007 Journal Article Population connectivity and conservation of marine biodiversity Oceanography. v.20(3)100-111. Jones, G.P., Srinivasan, M. and Almany, G.R.
2007 Journal Article Local replenishment of coral reef fish populations in a marine reserve. Science. v.316:742-744. Almany, G.R., Berumen, M.L., Thorrold, S.R., Planes, S. and Jones, G.P.
2007 Journal Article Morphological predictors of swimming speed: a case study of pre-settlement juvenile coral reef fishes. Journal of Experimental Biology. v.210:2436-2443. Fisher, R. and Hogan, J.D.
2007 Journal Article Critical swimming speed of settlement-stage coral reef fishes from the Caribbean: a methodological and geographical comparison. Bulletin of Marine Science.v.80(1)219-231. Hogan, J.D., Fisher, R. and Nolan, C.
2007 Journal Article Characterization of one trinucleotide and six dinucleotide microsatellite markers in bicolor damselfish, Stegastes partitus, a common coral reef fish Conservation Genetics. v.8:983-985. Thiessen, R.J. and Heath, D.D.
2007 Journal Article Habitat choice, recruitment and the response of coral reef fishes to coral degradation. Oecologia. v.153:727-737. Feary, D.A., Almany, G.R., McCormick, M.I. and Jones, G.P.
2007 Journal Article Predators target rare species in coral-reef fish assemblages. Oecologia. v.152:751-761. Almany, G.R., Peacock, L.F., Syms, C., McCormick, M. I. and Jones, G.P
2007 Journal Article Coral degradation and the structure of tropical reef fish communities. Marine Ecology Progress Series (MEPS) v.333:243-248. Feary, D.A., Almany, G.R. Jones, G.P. and McCormick, M.I.
2007 Journal Article Phase shifts, herbivory and the resilience of coral reefs to climate change. Current Biology. v.17:360-365. Hughes, T. P., Rodrigues, M. J., Bellwood, D. R., Ceccarelli, D., Hoegh-Gulberg, O., McCook, L., Moltschaniwskyj, N., Pratchett, M. S., Steneck, R. S. and Willis, B.
2007 Journal Article Population connectivity in marine systems: An overview. Oceanography. v.20(3)14-21. Cowen, R.K., Gawarkiewicz, G., Pineda, J., Thorrold, S.R. and Werner, F.E.
2007 Journal Article Estimates of in situ larval development time for the lobster, Homarus americanus. Journal of Crustacean Biology. v.27(3)454-462. Annis, E.R., Incze, L.S., Wolff, N. and Steneck, R.
2007 Journal Article Surfing, spinning, or diving from reef to reef: How does it change population connectivity? Marine Ecology Progress Series (MEPS) v.347:285-300. Paris, C.B., Chérubin, L.M. and Cowen, R.K.
2007 Journal Article Coupled biological and physical models: Present capabilities and necessary developments for future studies of population connectivity. Oceanography. v.20(3)54-69. Werner, F.E., Cowen, R.K. and Paris, C.B.
2006 Book Marine Metapopulations. San Diego. Academic Press. Kritzer, J.P. and Sale, P.F. (eds.)
2006 Book The metapopulation ecology of coral reef fishes. [Chapter 2] In Kritzer, J.P. and P.F. Sale (eds.), Marine Metapopulations. Academic Press, San Diego. Kritzer, J.P. and Sale, P.F.
2006 Book The future of metapopulation science in marine ecology. [Chapter16] In Kritzer, J.P. and P.F. Sale (eds.), Marine Metapopulations. Academic Press, San Diego. Kritzer, J.P. and Sale, P.F.
2006 Book The merging of metapopulation theory and marine ecology: Establishing the historical context. [Chapter 1] In Kritzer, J.P. and P.F. Sale (eds.), Marine Metapopulations. Academic Press, San Diego. Sale, P.F., Hanski, I. and Kritzer, J.P.
2006 Book Lessons learned from experimental key-species restoration. [Chapter 12] In Precht W.F. (ed) Coral Reef Restoration Handbook. CRC Press. Pp.219-234. Miller, M.W. and Szmant, A.M.
2006 Book Juvenile and adult ecology. [Chapter 8] In Phillips, B.F. (ed.). Lobsters: Biology, Management, Aquaculture and Fisheries. Wiley-Blackwell. Butler, M.J. IV, Steneck, R.S. and Herrnkind, W.F.
2006 Book/Conference Paper The ecological consequences of catching the big ones. In Ward, T.M., Geddes, M.C. and Mayfield, S. (eds). Proceedings of the National Symposium on Ecosystem Research and Management of Fish and Fisheries. Adelaide, Sept 2004. Australian Society for Fish Biology. pp. 61-62 Butler, M.J. IV.
2006 Conference Paper A method of statistical modelling of coral reef fish distribution: can it aid conservation planning in data poor regions? Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan, June 28-July 2, 2004. pp. 1445-1456. Beger, M., Jones, G.P. and Possingham, H. P.
2006 Conference Paper Developmental changes in coral larval buoyancy and vertical swimming behavior: Implications for dispersal and connectivity. Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan, June 28-July 2, 2004. p431-437. Szmant, A.M. and Meadows, M.
2006 Conference Paper Settlement preferences and post-settlement mortality of laboratory cultured and settled larvae of the Caribbean hermatypic corals Montastraea faveolata and Acropora palmata in the Florida Keys, USA. Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan. June 28-July 2, 2004. p43-49. Szmant, A.M. and Miller, M.W.
2006 Conference Paper Connectivity: What it is, how it is measured, and why it is important for management of reef fishes. Caribbean Connectivity Keynote Address. 59th Annual Meeting of the Gulf and Caribbean Fisheries Institute, Belize City, 6-11/11/06 Sale, P.F. and Kritzer, J.P.
2006 Conference Paper Behavior of larval and postlarval Caribbean spiny lobster and implications for pan-Caribbean connectivity. 7th Larval Biology Symposium. Coos Bay, Oregon. 27/8-1/9/06. Goldstein, J.S., Matsuda, H., Butler, M. J. IV and Cowen, R.K.
2006 Journal Article Staying connected in a turbulent world. Science. v.311:480-481. Steneck, R.S.
2006 Journal Article Ocean ecology: Don’t fence me in. Current Biology. v.16(16)R639-R640 Thorrold, S.R.
2006 Journal Article Multiple disturbances and the global degradation of coral reefs: are reef fishes at risk or resilient? Global Change Biology. v.12:2220-2234. Wilson, S.K., Graham, N.A.J., Pratchett, M.S., Jones G.P. and Polunin, N.V.C
2006 Journal Article Spawning season fidelity in sympatric populations of Atlantic herring (Clupea harengus). Canadian Journal of Fisheries and Aquatic Sciences. v.63:607-616. Brophy, D., Danilowicz, B.S. and King, P.A.
2006 Journal Article Scaling of connectivity in marine populations. Science. v.311:522-527. Cowen, R.K., Paris, C.B. and Srinivasan, A.
2006 Journal Article Temporal and spatial variability in growth and condition of dab (Limanda limanda) & sprat (Sprattus sprattus) larvae in the Irish Sea. Fisheries Oceanography. v.15(6)490-507. Lee, O., Danilowicz, B.S.and Dickey-Collas, M.
2006 Journal Article Particles are better than dye: Direct measurement of Lagrangian connectivity of coral larvae. Eos Trans. AGU. v.87 (36) Ocean Sciences Meeting Supplement. Abstract OS46E-17 Ruddick, B.R., Taggart, C.T., Feichter, J., Szmant, A.M. and Whitehead, R.F.
2006 Journal Article Spatial variation in otolith chemistry of Lutjanus apodus at Turneffe Atoll, Belize. Estuarine, Coastal and Shelf Science. v.67:673-680. Chittaro, P.M., Usseglio, P., Fryer, B.J., and Sale, P.F.
2006 Journal Article Weak genetic structure indicates strong dispersal limits: a tale of two coral reef fish. Proceedings of The Royal Society. Part B. v.273:1483-1490. Purcell, J.F.H., Cowen, R.K., Hughes, C.R. and Willams, D.A.
2006 Journal Article Development and characterization of eight new microsatellite markers for the haremic sandperch, Parapercis cylindrica (Family Pinguipedidae). Molecular Ecology Notes. v.6:1036-1038. Smith-Keune, C., Jerry, D.R., Evans, B.S., McCormick, M.I., Munday, P.L. and Jones, G.P.
2006 Journal Article Transgenerational marking of embryonic otoliths in marine fishes using barium stable isotopes. Canadian Journal of Fisheries and Aquatic Sciences. v.63(6)1193-1197. Thorrold, S.R., Jones, G.P., Planes, S. and Hare, J.A.
2006 Journal Article Water, not food, contributes the majority of strontium and barium deposited in the otoliths of a marine fish. Marine Ecology Progress Series (MEPS) v.311:125-130. Walther, B.D. and Thorrold, S.R.
2006 Journal Article Coral settlement onto Halimeda opuntia: a fatal attraction to an ephemeral substrate? Coral Reefs. v.25:585-591. Nugues, M. and Szmant, A.M.
2006 Journal Article Extended breeding and recruitment periods of fishes on a low latitude coral reef. Coral Reefs. v.25:673-682. Srinivasan, M. and Jones, G.P.
2006 Journal Article Density-dependent population dynamics in juvenile Panulirus argus (Latreille): the impact of artificial density enhancement. Journal of Experimental Marine Biology and Ecology. v.334:84-95. Behringer, D.C. and Butler IV, M. J.
2006 Journal Article The adaptive value of aggregation among juvenile Caribbean spiny lobster: an evaluation using individual-based modeling. Journal of Crustacean Biology. v.26(4):565-578. Dolan III, T.W. III and Butler IV, M. J.
2006 Journal Article Possible demographic consequences to intraspecific shelter competition among American lobsters. Journal of Crustacean Biology. v.26(4):628-638. Steneck, R.S.
2006 Journal Article Resource use and the impact of three herbivorous damselfishes on coral reef communities. Marine Ecology Progress Series (MEPS) v.328:215-224. Jones, G.P., Santana, L., McCook L.J. and McCormick, M.I.
2006 Journal Article Vital demographic statistics and management of the baldchin groper (Choerodon rubescens) from the Houtman Abrolhos Islands. Marine and Freshwater Research. v57:485-496. Nardi, K., Newman, S.J., Moran, M.J. and Jones, G.P.
2006 Journal Article Mass mortality following disturbance in Holocene coral reefs from Papua New Guinea. Geology. v.34 (11)949-952. Pandolfi, J. M., Tudhope, A.W., Burr, G., Chappell, J., Edinger, E., Frey, M. Steneck, R., Sharma, C., Yeats, A., Jennions, M., Lescinsky, H. and Newton, A.
2006 Journal Article Globalization, roving bandits and marine resources. Science. v.311:1557-1558 + erratum. Berkes, F., Hughes, T.P., Steneck, R.S., Wilson, J. Bellwood, D. R., Crona, B., Folke, C., Leslie, H., Norberg, J., Nystrom, M., Olsson, P., Osterblom, H., Scheffer, M. and Worm, B.
2006 Journal Article Is the American lobster, Homarus americanus, overfished? A review of overfishing with an ecologically-based perspective. Bulletin of Marine Science. v.78(3)607-632. Steneck, R.S
2006 Journal Article Genetics and the study of fisheries connectivity among marine species in Asian developing countries. Fisheries Research. v.78:158-168. Ablan, Ma.C.A
2006 Journal Article Microsatellite loci for studies on population differentiation and connectivity of the red-bellied yellow tail fusilier, Caesio cuning (Caesionidae). Molecular Ecology Notes. v.6:170-172. Ablan, Ma.C.A.
2006 Journal Article In situ experiment of ontogenetic variability in the otolith microchemistry of Stegastes partitus. Marine Biology. v.149:1227-1235. Chittaro, P.M., Hogan, J.D., Gagnon, J., Fryer, B.J. and Sale, P.F.
2006 Journal Article The differentiation of Stegastes partitus populations using lapillar and sagittal otolith chemistry. Journal of Fish Biology. v.68:1909-1917. Chittaro, P.M., Gagnon, J. and Fryer, B.J.
2005 Book Is large carnivore conservation equivalent to biodiversity conservation and how can we achieve both? In Ray, J., Redford, K., Steneck, R. and Berger, J. (eds.) Large Carnivores and the conservation of biodiversity. Island Press. Ray, J.C., Redford, K.H., Berger, J. and Steneck, R.S.
2005 Book An ecological context for the role of large carnivorous animals in conserving biodiversity In Ray, J., Redford, K., Steneck, R. and Berger, J. (eds). Large Carnivores and the conservation of biodiversity. Island Press. Steneck, R.S.
2005 Book Large marine carnivores: trophic cascades and top-down controls in coastal ecosystems past and present. In Ray, J., Redford, K., Steneck, R. and Berger, J. (eds) Large Carnivores and the conservation of biodiversity . Island Press. Steneck, R.S and Sala, E.A
2005 Book Lutjanidae: Snappers. In W.J. Richards (ed). Early Stages of Atlantic Fishes. CRC Press Lindeman, K.C., Richards, W.J., Lyczkowski-Shultz, J., Drass, D.M., Paris, C.B., Leis, J.M., Lara, M.,and Comyns, B.H.
2005 Book Grunts: Haemulidae. In W.J. Richards (ed). Early Stages of Atlantic Fishes. CRC Press Lindeman, K. B. and Richards, W. J.
2005 Journal Article Using otolith microchemistry of Haemulon flavolineatum (French Grunt) to characterize mangroves and coral reefs throughout Turneffe Atoll, Belize: Difficulties at small spatial scales. Estuaries. V.28(3)373-381. Chittaro, P.M., Usseglio, P., Fryer, B.J., and Sale, P.F.
2005 Journal Article New paradigms for supporting the resilience of marine ecosystems. Trends in Ecology and Evolution. v.20(7)380-386. Hughes, T.P., Bellwood, D.R., Folke, C., Steneck, R.S. and Wilson, J.
2005 Journal Article Small-scale spatio-temporal variability in ichthyoplankton and zooplankton distribution in relation to a tidal-mixing front in the Irish Sea. ICES Journal of Marine Science. v.62:1021-1036. Lee, O., Nash, R.D.M. and Danilowicz, B.S
2005 Journal Article Larval transport pathways from Cuban snapper (Lutjanidae) spawning aggregations based on biophysical modeling Marine Ecology Progress Series (MEPS). v.296:93-106. Paris, C. B., Cowen, R. K., Claro, R. and Lindeman, K.C.
2005 Journal Article Polymorphic microsatellite loci for the masked goby, Coryphopterus personatus (Gobiidae) Conservation Genetics. v.6:1059-1062. Hepburn, R.I., Mottillo, E. Bentzen, P. and Heath, D.D.
2005 Journal Article Coral reef fish larvae settle close to home. Current Biology. v.15:1314-1318. Jones, G., Planes, S. and Thorrold, S.R
2005 Journal Article Generating molecular markers from zooxanthellate cnidarians. Coral Reefs. v.24:57-66. Shearer, T.L., Gutierrez-Rodriguez, C. and Coffroth, M.A
2005 Journal Article Experimental assessment of sensory modalities of coral-reef fish larvae in the recognition of their settlement habitat. Behavioural Ecology & Sociobiology. v.58:18-26. Lecchini D., Planes, S. and Galzin, R
2005 Journal Article Recruitment in degraded marine habitats: a spatially-explicit, individual-based model for spiny lobster Ecological Applications. v.15(3)902-918. Butler, M.J. IV, Dolan, T., Hunt, J.H., Rose, K. and Herrnkind, W.F.
2005 Journal Article Recruitment of Acropora, Millepora and Stylaster roseus on an experimental substratum. Coral Reefs. v.24:56 Ruiz-Zárate, M.A. and Arias-González, J.E.
2005 Journal Article The relation of microhabitat to variation in recruitment of young-of-year coral reef fishes. Bulletin of Marine Science. v.76(1)123-142. Sale, P.F., Danilowicz, B.S. Doherty, P.J. and Williams, D.McB.
2005 Journal Article Interaction between inorganic nutrients and organic matter in controlling coral reef communities in Glovers Reef Belize. Marine Pollution Bulletin. v.50:566-575. McClanahan, T.R., Steneck, R.S., Cokos, B., Pietri, D. and Jones, S.
2005 Journal Article Critical science gaps impede use of no-take fishery reserves. Trends in Ecology and Evolution. V.20(2)74-80. Sale, P.F., Cowen, R.K., Danilowicz, B.S., Jones, G.P., Kritzer, J.P., Lindeman,K.C., Planes, S., Polunin, N.V.C., Russ,G.R., Sadovy, Y.J. and Steneck, R.S.
2005 Journal Article Trouble on the reef: the imperative for managing vulnerable and valuable fisheries. Fish & Fisheries. V.6:167-185. Sadovy, Y.
2005 Journal Article Benthic fisheries ecology in a changing environment: Unravelling process to achieve prediction. Aquatic Living Resources. V.18:301-311. Butler, M.J. IV
2005 Journal Article Juveniles of the Caribbean’s largest coral reef snapper do not use reefs. Coral Reefs. v.24(3)359 Lindeman, K.C. and DeMaria, D.
2005 Journal Article Variation in fish density, assemblage composition and relative rates of predation among mangrove, seagrass, and coral reef habitats. Environmental Biology of Fishes. v.72:175-187. Chittaro, P.M., Usseglio, P. and Sale, P.F.
2005 Journal Article Competition, predation, and density-dependent mortality in demersal marine fishes. Ecology. v.86(1)2847-2859. Hixon, M.A. and Jones, G.P.
2005 Journal Article Foragers versus farmers: contrasting effects of two behavioural groups of herbivores on coral reefs. Oecologia. v.145:445-453. Ceccarelli, D.M., Jones, G.P. and McCook, L.J.
2005 Journal Article Effects of territorial damselfish on an algal-dominated coastal coral reef. Coral Reefs. v.24:606-620. Ceccarelli, D.M., Jones, G.P. and McCook, L.J.
2005 Journal Article Phylogeography of colour polymorphism in the coral reef fish, Pseudochromis fuscus, from Papua New Guinea and the Great Barrier Reef. Coral Reefs. v.24:392-402. Messmer, V., van Herwerden, L., Munday, P.L. and Jones, G.P.
2005 Journal Article Biophysical mechanisms of larval fish ingress into Chesapeake Bay. Marine Ecology Progress Series (MEPS). v.303:295-310. Hare, J.A., Thorrold, S.R. Walsh, H., Reiss, C., Valle-Levinson, A. and Jones, C. M.
 
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Disease ******

Year Publicaton Type Name of Article Publication Authors
2009 Journal Article Phage therapy of coral white plague disease: Properties of phage BA3. Current Microbiology v.58(2)139-145 Efrony, R., Atad, I. and Rosenberg, E.
2009 Journal Article Spatial variability in distribution and prevalence of Caribbean coral and octocoral diseases l: Community level analysis. Diseases of Aquatic Organisms v.83(3)195-208 Weil, E. and Croquer, A.
2009 Journal Article Spatial variability in distribution and prevalence of Caribbean scleractinian coral and octocoral diseases lI: Genera level analysis. Diseases of Aquatic Organisms v.83(3) 209-222 Croquer, A. and Weil, E.
2008 Book Coral disease and global climate change. In Uzochukwu, G. (ed), Proceedings of the 3rd Nat. Conf. on Environ. Sci. and Tech. Greensboro, NC. Springer Press Smith , G.W. and Smith, M.A.
2008 Book A Coral Disease Handbook: Guidelines for Assessment, Monitoring and Management Coral Reef Targeted Research & Capacity Building for Management Program. Raymundo, L.J., Couch, C.S., Bruckner, A.W., Harvell, C.D., Work, T.M., Weil, E., Woodley, C.M., Jordan-Dahlgren, E., Willis, B.L., Sato, Y and Aeby, G.S.
2008 Book Biology and Ecology of Puerto Rican Coral Reefs. Chapter 9. In Reigl, B.M. and Dodge, R.E. (eds). Coral Reefs of the USA. Berlin. Springer Science. Ballantine, D.L., Appeldoorn, R.S., Yoshioka, P., Weil, E., Armstrong, R., Garcia, J.R., Otero, E., Pagan, F., Sherman, C., Hernandez-Delgado, E.A., Bruckner, A.W. and Lilyestrom, C.
2008 Book Consequences of coral bleaching for sessile reef organisms. Chapter 8. In van Oppen, M. and Lough, J. (eds). Coral Bleaching: Patterns, Processes, Causes and Consequences. Ecological Studies. V.205:121-138. Berlin: Springer . McClanahan, T.R., Weil E., Cortes, J., Baird, A.and Ateweberhan, M.
2008 Conference Paper Inoculation of Vibrio spp. onto Montastraea faveolata fragments to determine potential pathogenicity. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [7.193] Weil, E., Ritchie, K.B. and Smith, G.W.
2008 Conference Paper A survey of Vibrios associated with healthy and yellow-band diseased Montastraea faveolata. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [7.191] Cunning, R., Thurmond, J.., Smith, G., Weil, E. and Ritchie, K.
2008 Conference Paper Molecular analysis of bacteria associated with healthy and yellow-band diseased Montastraea faveolata. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [7.190] Thurmond, J., Weil, E. and Ritchie, K.
2008 Journal Article Coral pathogens identified for white syndrome (WS) epizootics in the Indo-Pacific. PLoS ONE v.3(6)e2393 Sussman, M., Willis, B.L., Victor, S. and Bourne, D.G.
2008 Journal Article Evidence of an inflammatory-like response in non-normally pigmented tissues of two scleractinian corals. Proceedings of The Royal Society of London. Part B. Biological Sciences. v.275 (1652) 2687-2693/ Palmer, C., Mydlarz, L. and Willis, B.L.
2008 Journal Article Bacterial growth on coral mucus. Current Microbiology. v.56:481-488. Sharon, G. and Rosenberg, E.
2008 Journal Article Role of microorganisms in the evolution of animals and plants: the hologenome theory of evolution. FEMS Microbiology Reviews. v.32(5)723-735. Zilber-Rosenberg, I. and Rosenberg, E.
2008 Journal Article Genome analysis of the coral bleaching pathogen Vibrio shiloi. Archives of Microbiology. v.190:185-194. Reshef, L., Ron, E.Z. and Rosenberg, E.
2008 Journal Article The role of microorganisms in coral bleaching. ISME Journal (Journal of the International Society for Microbial Ecology) 2008:1-8. Rosenberg, E., Kushmaro, A., Kramarsky-Winter, E., Banin, E. and Loya, Y.
2008 Journal Article Determination of carotenoid as the purple pigment in Gorgonia ventalina sclerites using Raman microscopy. Spectrochimica Acta. Part A. v.69(3)1058-1061. Leverette, C.L., Warren, M., Smith, M.A. and Smith, G.W.
2008 Journal Article Gradients of coastal fish farm effluents and their effect on coral reef microbes. Environmental Microbiology. v.10(9)2299-2312. Garren, M., Smriga, S. and Azam, F,
2008 Journal Article Identification of a ciliate (Oligohymenophora: Scuticociliata) associated with brown band disease (BrB) on corals of the Great Barrier Reef. Applied & Environmental Microbiology [Online] doi:10.1128/AEM.01124-07 Bourne, D.G., Boyett, H.V., Hendersen, M.E., Muirhead, A. and Willis, B.L.
2008 Journal Article ReefTemp: An interactive monitoring system for coral bleaching using high-resolution SST and improved stress predictors. Geophysical Research Letters. v.35: L05603. Maynard, J.A., Turner, P.J., Anthony, K.R.N., Baird, A.H., Berkelmans, R., Eakin, C.M., Johnson, J., Marshall, P.A., Packer, G.R., Rea, A. and Willis, B.L.
2008 Journal Article Biochemical and veterinary science can increase our understanding of coral disease. Journal of Experimental Marine Biology and Ecology. v.362:63-70. Work, T.M., Richardson, L.L., Reynolds, T.L. and Willis, B.L.
2008 Journal Article Variation in measures of immunocompetence of sea fan coral, Gorgonia ventalina, in the Florida Keys. Marine Biology. v.155:281-292. Couch, C.S., Mydlarz, L.D., Harvell, C.D. and Douglas, N.L.
2008 Journal Article Bacterial growth on coral mucus. Current Microbiology. v.56:481-488. Sharon, G. and Rosenberg, E.
2008 Journal Article Bacteria associated with the bleached and cave coral Oculina patagonia. Microbial Ecology. v.55(3)523-529. Koren, O. and Rosenberg, E.
2008 Journal Article Microbial ecology of four coral atolls in the Northern Line Islands. PLoS ONE. v.3(2)e1584 Dinsdale, E.A., Pantos, O., Smriga, S., Edwards, R.A., Angly, F., Wegley, L., Hatay, M., Hall, D., Brown, E., Haynes, M., Krause, L. Sala, E., Sandin, S.A., Vega Thurber, R., Willis, B.L., Azam, F., Knowlton, N. and Rohwer, F.
2008 Journal Article The Vibrio core group induces yellow band disease in Caribbean and Indo-Pacific reef-building corals. Journal of Applied Microbiology v.105:1658-1671. Cervino, J.M., Thompson, F. L., Gómez-Gil, B., Lorence, E.A., Goreau, T. J., Hayes, R. L., Winiarski-Cervino, K.B., Smith, G.W., Hughen, K. and Bartels, E.
2008 Journal Article Epidemiology of skeletal eroding band on the Great Barrier Reef and the role of injury in the initiation of this widespread coral disease. Coral Reefs. v.27(2)257-272. Page, C.A. and Willis, B.L.
2008 Journal Article Strong relationship between coral bleaching and growth anomalies in massive Porites. Global Change Biology. [Online] McClanahan, T.R., Weil, E., Maina, J. and Lohr, J.
2008 Journal Article Evaporite microbial films, mats, microbialites and stromatolites. In Dilek, Y., Furnes, H. and Muehlenbachs, K. (eds), Links between Geological Processes, Microbial Activities and Evolution of Life. Modern Approaches in Solid Earth Sciences. v.4:197-235. Springer. Brigmon, R.L., Morris, P. and Smith, G.
2008 Product / Other The State of Coral Reef Ecosystems of Puerto Rico. Chapter 3. In Wadell, J.E. and Clarke, A.M. (eds) The State of Coral Reef Ecosystems of the United States and Pacific Freely Associated States: 2008. NOAA Technical Memorandum NOS NCCOS 73. pp75-116. García-Sais, J., Appeldoorn, R., Battista, T., Bauer, L., Bruckner, A., Caldow, C., Carrubba, L. Corredor, J., Diaz, E., J.D., Lilyestrom, C., Garcia-Moliner, G., Hernandez-Delgado, W., Menza, C., Morell, J., Pait, T., Sabater, J., Weil, E., Williams, E. and Williams, S.
2008 Product / Other Marine Protected Area Surveys of the Central Visayas—2007. Summary Report. University of Guam Technical Report No. 122. Raymundo, L., Maypa, A., Rojas, P. and Myers, R.
2008 Product / Other Underwater cards for assessing coral health on Indo-Pacific reefs. Coral Reef Targeted Research & Capacity Building for Management Program. Beeden, R., Willis, B.L., Raymundo, L., Page, C.A. and Weil, E.
2008 Product / Other Underwater cards for assessing coral health on Caribbean reefs. Coral Reef Targeted Research & Capacity Building for Management Program. Weil, E. and Hooten, A.J.
2008 Product / Other Arrecifes coralinos de Cozumel. In Mejía Ortiz, L.M. (ed.) Biodiversidad Acuática de la Isla de Cozumel. Mexico: Plaza y Valdéz. Jordán-Dahlgren, E.
2007 Book Vulnerability of reef-building corals on the Great Barrier Reef to climate change. Chapter 10. In Johnson, J.E. & Marshall, P.A. (eds) Climate Change and the Great Barrier Reef: A vulnerability Assessment. Great Barrier Reef Marine Park Authority, Townsville & Australian Greenhouse Office. Hoegh-Guldberg, O., Anthony, K.R., Berkelmans, R., Dove, S., Fabricius, K., Lough, J., Marshall, P., van Oppen, M.J.H., Negri, A. and Willis, B.L.
2007 Journal Article The role of microorganisms in coral health, disease and evolution. Nature Reviews: Microbiology. v.5(5)355-362 Rosenberg, E., Koren, O., Reshef, L., Efrony R. and Zilber-Rosenberg I.
2007 Journal Article Coral microbiology. Oceanography. v.20(2)146-154 Rosenberg, E., Kellogg, C.A., and Rohwer, F.
2007 Journal Article Phage therapy of coral disease Coral Reefs. v.26:7-13 Efony, R., Loya, Y., Bacharach, E. and Rosenberg, E.
2007 Journal Article Exploring the role of chitinolytic enzymes in the sea fan coral, Gorgonia ventalina. Marine Biology. v.150:1137-1144. Douglas, N.L., Mullen, K., Talmage, S. and Harvell, C.D.
2007 Journal Article Peroxidase activity and inducibility in the sea fan coral exposed to a fungal pathogen. Comparative Biochemistry & Physiology. Part A. v.146:54-62 Mydlarz, L. and Harvell, C.D.
2007 Journal Article Bacterial communities associated with the mucopolysaccharide layers of three coral species affected and unaffected with dark spots disease Canadian Journal of Microbiology. v.53(4)465-471. Gil-Agudelo, D.L,, Fonseca, D.P., Weil, E., Garzón-Ferreira, J. and Smith G.W.
2007 Journal Article Coral disease, environmental drivers and the balance between coral and microbial associates. Oceanography. v.20(1)172-195. Harvell, C.D., Jordan-Dahlgren, E., Merkel, S., Rosenberg, E., Raymundo, L., Smith, G.W., Weil, E. and Willis, B.
2007 Journal Article Temperature affects coral disease resistance and pathogen growth. Marine Ecology. Progress Series. V.329:115-121. Ward, J.R., Kim, K. and Harvell, C.D.
2007 Journal Article Within-host disease ecology in the sea fan Gorgonia ventalina: modeling the spatial immunodynamics of a coral-pathogen interaction. The American Naturalist. v.170(6)E143-E161. Ellner, S., Jones, L., Mydlarz, L. and Harvell, C.D.
2007 Journal Article Thermal stress and coral cover as drivers of coral disease outbreaks. Public Library of Science (PLoS) Biology. v.5(6)e124:1220-1227 Bruno, J.F., Selig, E.R., Casey, K.S., Page, C.A., Willis, B.L., Harvell, C.D., Sweatman, H. and Melendy, A.M.
2007 Journal Article Bacteria associated with the coral Echinopora lamellosa (Esper 1795) in the Indian Ocean -Zanzibar Region. African Journal of Environmental Science & Technology. v.1(5)93-98. Piskorska, M., Smith, G. and Weil, E.
2007 Journal Article The relationship between water quality, δ15N, and aspergillosis of Caribbean sea fan corals. Marine Ecology. Progress Series. v.343:123-130. Baker, D.M., MacAvoy, S.E. and Kim, K.
2007 Journal Article Elevated temperature and light enhance progression and spread of black band disease on staghorn corals of the Great Barrier Reef. Marine Biology. v.151:1711-1720. Boyett, H.V., Bourne, D.G. and Willis, B.L.
2006 Book Analyzing the relationship between ocean temperature anomalies and coral disease outbreaks at broad spatial scales. In Phinney, J., Skirving, W., Kleypas, J. & Hoegh-Guldberg, O. (eds). Coral reefs and climate change: Science and management. 61.(Coastal & Estuarine Sciences) pp111-128. AGU Press. Selig, E.R., Harvell, C.D,. Bruno, J., Willis, B., Page, C., Casey, K. and Sweatman, H.
2006 Book Characterization of coral surface microbiota using metabolic profiling. In Proceedings of the 10th International Coral Reef Symposium. pp.149-152. Gil-Agudelo, D.L., Ali-Hassan, L., Kim, K. and Smith, G.W.
2006 Journal Article Changes in the microbial communities associated with Gorgonia ventalina during aspergillosis infection. Diseases of Aquatic Organisms. v.69:89-94. Gil-Agudelo, D.L., Myers, C., Smith, G.W. and Kim, K.
2006 Journal Article Distribution, host range and large-scale spatial variability in black band disease prevalence on the Great Barrier Reef, Australia. Diseases of Aquatic Organisms. v.69:41-51. Page, C. and Willis, B.
2006 Journal Article Coral diversity and disease in Mexico. Diseases of Aquatic Organisms. v.69:23-31. Ward, J.R., Rypien, K., Bruno, J., Harvell, C., Jordan-Dahlgren, E., Mullen, K., Rodriguez-Martinez, R., Sanchez, J. and Smith, G.
2006 Journal Article Status and progress in coral disease research. Diseases of Aquatic Organisms. v.69:1-7. Weil, E., Smith, G.W. and Gil-Agudelo, D.
2006 Journal Article Thalassomonas loyana sp. nov., a causative agent of the white plague-like disease of corals on the Eilat coral reef. International Journal of Systematic & Evolutionary Microbiology. V. 56(2)365-368 Thompson, F.L., Barash, Y., Sawabe, T., Sharon, G., Swings, J. and Rosenberg, E.
2006 Journal Article Folliculinid ciliates: a new threat to Caribbean corals? Diseases of Aquatic Organisms. v.69:75-78 Croquer, A., Bastidas, C. and Lipscomb, D.
2006 Journal Article The white band disease type II pathogen in Puerto Rico. Rev.Biol.Trop (International Journal of Tropical Biology) v.54 Supp 3:59-67 Gil-Agudelo, D.L., Smith, G. and Weil, E.
2006 Journal Article Identification of bacteria associated with a disease affecting the marine sponge Ianthella basta in New Britain, Papua New Guinea. Marine Ecology. Progress Series. V.324:139-150. Cervino, J.M., Winiarski-Cervino, K., Polson, S.W., Goreau, T. and Smith, G.W.
2006 Journal Article Saharan dust — a carrier of persistent organic pollutants, metals and microbes to the Caribbean? Rev.Biol.Trop (International Journal of Tropical Biology) v.54 Supp 3:9-21. Garrison, V.H., Foreman, W.T., Genualdi, S., Griffin, D.W., Kellogg, C.A., Majewski, M.S., Mohammed, A., Ramsubhag, A., Shinn, E.A., Simonich, S.L. and Smith, G.W.
2006 Journal Article Host range and resistance to aspergillosis in three sea fan species from the Yucatan Marine Biology. v.149:1355-1364. Mullen, K., Harvell, C.D., Alker, A., Dube, D., Jordan-Dahlgren,E., Ward, J. and Petes, L.
2006 Journal Article Innate immunity, environmental drivers, and disease ecology of marine and freshwater invertebrates Annual Review of Ecology, Evolution and Systematics. v.37:251-288. Mydlarz, L., Jones, L. and Harvell, C.D.
2006 Journal Article A single cyanobacterial ribotype is associated with both red and black bands on diseased corals from Palau. Diseases of Aquatic Organisms. v.69:111-118 Sussman, M., Bourne, D.G. and Willis, B.L
2006 Journal Article Bacteria associated with mucus and tissues of the coral Oculina patagonica in summer and winter. Applied and Environmental Microbiology. v.72(8) 5254-5259. Koren, O. and Rosenberg, E.
2006 Journal Article First report of folliculinid ciliates affecting Caribbean scleractinian corals. Coral Reefs. v.25(2)187-191. Cróquer, A., Bastidas, C., Lipscomp, D., Rodríguez-Martínez, R.E., Jordan-Dahlgren, E. and Guzman, H.M.
2006 Journal Article The coral probiotic hypothesis. Environmental Microbiology. V.8(12)2068-2073. Reshef, L., Koren, O., Loya, Y., Zilber-Rosenberg, I.Z. and Rosenberg, E.
 
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Modelling & Decision Support ******

Year Publicaton Type Name of Article Publication Authors
2008 Book Status of Coral Reefs in Lingayen Gulf In Coral Reef Information Network of the Philippines (PhilReefs). 2008. Reefs through time 2008: Initiating the state of the coasts reports. Coral Reef Information Network of the Philippines (PhilReefs), MPA Support Network, Marine Environment & Resources Foundation, Inc. and the Marine Science Institute, University of the Philippines, Diliman, Quezon City, pp. 15-25. Geronimo, R.C., Salmo III, S., Deocadez, M.R.,Castrence Jr., F., Pacifico, K., Junsan, C. and Sagip Lingayen Gulf Project and Partners.
2008 Conference Paper Biodiversity and ecosystem functioning in three coral reefs at the Mexican Caribbean. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [10.384] Rodriguez-Zaragoza, F. and Arias-Gonzalez, J.
2008 Conference Paper Factors influencing coral recruitment patterns in the Sulu Sea marine corridors 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [10.274] Garcia, J. and Alino, P.
2008 Conference Paper Great Barrier Reef coral communities: Resilient in the 1980s but struggling in the 2000s 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [12-28] Done, T., Devantier, L., Turak, E., Wakeford, M., McDonald, A. and Johnson, C.
2008 Conference Paper Spatial prediction of reef bathymetry and geomorphology using high-resolution satellite imagery. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [17-6] Garza-Perez, J.R., Rankey, E.C., Ginsburg, R.N., Reeder, S.L., Guidry, S.A. and Guarin, H.
2008 Conference Paper Life after death: Pleistocene reefs of Sisal, Yucatan Shelf. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [17.583] Zarco-Perello, S., Garza-Perez, J.R., Simoes, N., Mascaro-Miquelajauregui, M. and Chiappa-Carrara, X.
2008 Conference Paper Impacts of coastal development on ecosystem structure and function of Yucatan coral reefs, Mexico. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18.734] Bozec, Y-M., Acosta-Gonzalez, G., Nunez-Lara, E.and Arias-Gonzalez, J.E.
2008 Conference Paper Coral reef biodiversity loss at Mexican Caribbean due to the increasing tourist development effects. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18.758] Acosta-Gonzalez, G.,Rodriguez-Zaragoza, F,, Gonzalez-Salas, C, and Arias-Gonzalez, J.
2008 Conference Paper Coral community structure of the Bolinao Reef System, northwest Philippines. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18.643] Vergara, M.W., Licuanan, W. and Alino, P.
2008 Conference Paper Status of the Philippine coral reefs: 2004-2007. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18.673] Gonzales, R.O., Deocadiz, M., Alino, P., Nanola, C., Arceo, H., Geronimo, R.,Campos, W., Salmo III, S., Uychiaoco, A.J. and Reboton, C.
2008 Conference Paper One fish, two fish, red fish, blue fish: the use of simple agent-based models and role-play games to communicate key messages to community groups. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20-15] Cleland, D., Geronimo, R., Dray, A., Perez, P. and Trinidad, A.
2008 Conference Paper Models of coral reefs with and without macroalgae indicate differential resilience to fishing and anthropogenic nutrients. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20-6] Fung, T., Seymour, R. and Johnson, C.
2008 Conference Paper Predicting reef futures using a multi-scale coral reef ecosystem model. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20-14] Melbourne-Thomas, J., Johnson, C., Fung, T. and Seymour, R.
2008 Conference Paper The new commons: Why coral reef scientists should get out more. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20-12] Seymour, R. and Bradbury, R.
2008 Conference Paper The rites of passage in the marine corridors of the Sulu Sea. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [20.804] Alino, P., Campos, W., Francisco, K., Mamauag, S., Geronimo, R., Licuanan, W., Villanoy, C., Deocadiz, M. and Beldia, P.
2008 Conference Paper Implications of coastal development on resilience in linked socio-ecological Mexican Caribbean system. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [21-33] Arias-Gonzalez, J., Rivera, R., Bozec, Y-M., Rodriguez-Zaragoza, F., Castro-Perez, J., Villegas-Sanchez, C., Acosta-Gonzalez, G. and Lara-Arenas, H.
2008 Conference Paper Trajectories of ecosystem change in an extremely degraded reef in the Philippines. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [22.837] Geronimo, R., Alino, P., Castrence, Jr. F. and Uychiaoco, A.J.
2008 Conference Paper Hurricane Dean impacts on Chinchorro Bank coral reefs, Mexico: Bases to implement ecosystem-based fisheries management. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23-66] Hernandez, A., Rodriguez-Zaragoza, F., Acosta-Gonzalez, G., Ruiz-Zarate, M., Castro-Perez, J., Medina-Hernandez, A. and Garcia-Rivas, M.
2008 Conference Paper Using ichthyoplankton distribution in selecting sites for an MPA network in the Sulu Sea, Philippines. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23.6] Beldia III, P., Campos, W., Villanoy, C., Canto, M. and Alino, P.
2008 Conference Paper Spatial diversity of coral reef communities in Sulu Sea marine corridors 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23.903] Licuanan, W.R., Luzon, K. and Alino, P.
2008 Conference Paper Scaling-up efforts for fisheries management and marine biodiversity conservation through networks of marine protected areas in marine corridors within the Sulu-Sulawesi seascape. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23.985] Quibilan, M. C., Alino, P., Vergara, S. and Trono, R.
2008 Conference Paper Gaining ground in improving Marine Protected Areas (MPAs): The Philippine experience. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23.1038] Arceo, H., Alino, P., Lumbab, V., Nanola, C. and Portigo, Ma. F.
2008 Conference Paper Plan B for the Anthropocene. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [23-75] Bradbury, R. and Seymour, R.
2008 Journal Article Scaling up beta diversity on Caribbean coral reefs. Journal of Experimental Marine Biology and Ecology. v.366 (1-2)28-36. Arias-González, J. E., Legendre, P and Rodriguez-Zaragoza, F.A.
2008 Journal Article Additive diversity partitioning of reef fishes across multiple spatial scales. Caribbean Journal of Science v.44(1)90-101 Rodriguez-Zaragoza, F.A. and Arias-González, J. E.
2008 Journal Article Preliminary survey of fish community composition in seagrass habitat in two back-reef lagoons of the southern Mexican Caribbean. Gulf and Caribbean Research v.20(1)41-47 Yeager, L. A. and Arias-González, J. E.
2007 Book Going beyond FISH-BE: Towards understanding ecosystem scale and simple rules for local fisheries management In Philippine Environmental Governance (EcoGov 2) Project. 2007. FISH-BE Library of Models. Aliño, P.M. (ed). EcoGov 2 Project, Pasig City, Philippines, 100pp. Licuanan, W.R.Y., Geronimo, R.C. and Aliño, P.M.
2007 Conference Paper Decision support tools for managing coral reef systems at local to regional scales Proceedings, Environmental Research Event (ERE 2007), Townsville, Australia. ERE 2007 Organising Committee. Melbourne-Thomas, J., Johnson, C. R., Fung, T. and Seymour, R. M.
2007 Electronic Resource (Web) Banco Chinchorro Information System http://acme.math.cinvestav.mx:80/~merida/mapa.html Arias-González, J.E., Acosta-González, G., Hernández-Juárez, E. and Sagols-Troncoso, F. D.
2007 Product / Other Going Beyond FISH-BE: Towards understanding ecosystem scale and simple rules for local fisheries management. In Aliño, P.M. (ed). FISH-BE Library of Models. Philippine Environmental Governance (EcoGov 2) Project. 2007. Pasig City, Philippines, 100pp. Licuanan, W.R.Y., R.C. Geronimo, and P.M. Aliño
 
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Remote Sensing ******

Year Publicaton Type Name of Article Publication Authors
         
2009 Journal Article Cost Effective Mapping of Seagrass And Coral Reef Environments With Variable Water Clarity Coral Reef Roelfsema, C.M., S.R. Phinn
2008 Journal Article Automated benthic counting of living and non-living components in Ngedarrak Reef, Palau via subsurface underwater video. Environmental Monitoring and Assessment. V.145(1-3)177-184 Marcos, Ma. S.A., David, L.T., Penaflor, E., Ticzon, V. and Soriano, M.
2008 Book Hurricanes and their effects on coral reefs. In C. Wilkinson & D. Souter [Eds.], Status of Caribbean Coral Reefs after Bleaching and Hurricanes in 2005. Heron, S., Morgan, J., Eakin, M. and Skirving, W.
2008 Book The 2005 Bleaching Event: Coral-List Log In C. Wilkinson & D. Souter [Eds.], Status of Caribbean Coral Reefs after Bleaching and Hurricanes in 2005. Morgan, J., Heron, S. and Eakin, M.
2008 Book Coral Bleaching In M.D. King, et al. [Eds.], Our Changing Planet: The View From Space Liu, G. and Strong, A.E.
2008 Book Remote sensing: The promise and the reality. In: Dennison, W.,(Ed.) Coastal Assessment Handbook, University of Maryland Press. In press. Phinn, S.R., Stumpf, R. and Roelfsema, C.M.
2008 Conference Paper Cost Effective Mapping of Seagrass And Coral Reef Environments With Variable Water Clarity 11th International Coral Reef Symposium, Florida, USA, July 2008. Roelfsema, C.M. and Phinn, S.R.
2008 Conference Paper NOAA Coral Reef Watch Experimental Coral Bleaching Forecast Tool 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Liu, C-T., Christensen, T.R., Eakin, M., Morgan, J., Strong, A.E., Skirving, W., and Heron, S.
2008 Conference Paper CREIOS: NOAA’s Coral Reef Ecosystem Integrated Observing System 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Morgan, J., Eakin, M., Brainard, J.C., Hendee, J.E., Monaco, M.E., Christensen, T.R., Heron, S., Liu, C-T., Strong, A.E. and Skirving, W.
2008 Conference Paper Implications for our Coral Reefs in a Changing Climate over the next few decades – Hints from the past 22 years 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Strong, A.E., Liu, C-T., Christensen, T.R., Eakin, M., Morgan, J., Skirving, W. and Heron, S.
2008 Conference Paper Producing a satellite SST climatology -- how long is a piece of string? 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Heron, S., Christensen, T.R., Eakin, M., Liu, G., Morgan, J., Strong, A.E. and Skirving, W.
2008 Conference Paper Going, Going, Gone? Are 1998 and 2005 Signs of the Future for Coral Reefs 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Eakin, M., Morgan, J., Heron, S., Lough, Skirving, W., Liu, G., Christensen, T.R., Gledhill, D.K. and Strong, A.E.
2008 Conference Paper Linking environmental factors with coral disease events in the Caribbean 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Christensen, T.R., Heron, S., Skirving, W., Eakin, M., Willis, B., Harvell, C.D., Page, Mumby, P.J., Raymundo, L., Weil, E., Jordan, Bruno, Gledhill, D.K., Morgan, J. and Liu, G.
2008 Conference Paper A methodology for using satellite-based temperature and light measurements for predicting coral bleaching severity and mortality 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Skirving, W., Christensen, T.R., Dove, S., Eakin, M., Enriquez, S., Hedley, J., Heron, S., Hoegh-Guldberg, O., Iglesias, R., Mumby, P.J. and Strong, A.E.
2008 Conference Paper Monitoring oceanic and coastal variability in carbonate chemistry: tracking ocean acidification in the greater Caribbean region 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Gledhill, D.K., Wanninkhof, R., Millero, F.J., Eakin, C.M., Langdon, C., Hendee, J., Christensen, T.R., Strong, A.E., Skirving, W., Moran, Liu, G., Heron, S.
2008 Conference Paper Poster: NOAA Coral Reef Watch: Satellite Data Products for Coral Reef Managers, Through the World Bank/GEF Coral Reef Targeted Research Program 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Christensen, Strong, Skirving, Eakin, Morgan, Liu, Heron, Gledhill
2008 Conference Paper Poster: Satellite detection of low wind events conducive to mass coral bleaching: the NOAA Coral Reef Watch Experimental Doldrums Product 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Gledhill, Gramer, Strong, Skirving, Christensen, Morgan, Liu, Heron, Eakin
2008 Conference Paper NOAA Coral Reef Watch: Global satellite monitoring for coral reefs 11th International Coral Reef Symposium, July 2008 - Fort Lauderdale, USA Parker, Eakin, Morgan, Christensen, Liu, Heron, Gledhill, Skirving, Strong
2008 Conference Paper Australia’s Environmental Monitoring Information Needs for a Multi-spectral, Moderate Spatial Resolution Imaging Satellite Program. In: Proceedings of the 14th AustralAsian Remote Sensing and Photogrammetry Conference, Darwin, September 2008. Phinn, S.R., Held, A. and Roelfsema, C.M.
2008 Conference Paper Performance of Remote Sensing Approaches for Mapping Benthic Habitats Over a Range of (Sub-)Tropical Coastal Environments. In: Proceedings of the 14th AustralAsian Remote Sensing and Photogrammetry Conference, Darwin, September 2008. Roelfsema, C.M. and Phinn, S.R.
2008 Conference Paper Mapping Coral Reef Benthic Zones from High-Spatial Resolution Image Segmentation and Photo Transect Data. In: Proceedings of the 11th International Coral Reef Symposium, Fort Lauderdale, USA, July 7-11 2008. Phinn, S.R., Roelfsema, C.M., Leiper, I. and Mumby, P.J.
2008 Conference Paper Calibration and Validation of Coral Reef Benthic Community Maps from High-Spatial Resolution Satellite Data. In: Proceedings of the 11th International Coral Reef Symposium, Fort Lauderdale, USA, July 7-11 2008. Roelfsema, C.M. and Phinn, S.R.
2008 Conference Paper Mapping Coral Reef Benthic Communities with High Spatial Resolution Image Data. In: Proceedings of the 11th International Coral Reef Symposium, Fort Lauderdale, USA, July 7-11 2008. Leiper, I., Phinn, S.R. and Roelfsema, C.M.
2008 Journal Article A three-dimensional radiative transfer model for shallow water environments. Optics Express Hedley, J.D.
      v.16(26) 21887-21902  
2008 Journal Article Benthic Habitat Mapping in Variable Water Clarity Regimes: Optimal Remote Sensing Approaches Remote Sensing of Environment Roelfsema, C.M. and Phinn, S.R.
2008 Journal Article Seagrass mapping and monitoring methods in tropical Australia, Invited special issue on “Marine Benthic Habitats of the Pacific and Other Oceans: Status, Use, and Management”   Rasheed, M., McKenzie, L., Roelfsema, C.M. and Phinn, S.R.
2008 Journal Article An Integrated Field and Remote Sensing Approach for Mapping Seagrasses Cover and Species in an Complex Estuary, Moreton Bay, Australia. Journal of Spatial Science Roelfsema, C.M., Phinn, S.R. Udy, N. and Maxwell, P.
2008 Journal Article Mapping Seagrass Species, Cover and Biomass in Shallow Waters: An Assessment of Satellite Multi-spectral and Airborne Hyper-spectral Imaging Systems in Moreton Bay (Australia). Remote Sensing of Environment. Phinn, S.R., Roelfsema, C.M., Brando, V.B., Dekker, A.G. and Anstee, J.
2008 Journal Article Special Feature – High spatial resolution remote sensing for environmental monitoring and management. Journal of Spatial Science Johansen, K., Roelfsema, C. and Phinn, S.R.
2008 Journal Article Environmental and Sensor Limitations in Optical Remote Sensing of Coral Reefs: Implications for monitoring and sensor design Remote Sensing of Environment. Hedley, J., Roelfsema, C., Phinn, S.R. and Mumby, P.J.
2008 Journal Article An Examination of Variability in Vertical Radiometric Profiles in a Coral Reef Environment Journal of Coastal Research Holden, H. and LeDrew, E.
2008 Journal Article The impact of ecosystem connectivity on coral reef resilience Journal of Applied Ecology Mumby, P.J. and Hastings, A .
2008 Journal Article Coral reef management and conservation in the light of rapidly-evolving ecological paradigms Trends in Ecology and Evolution Mumby, P.J. and Steneck, R.S.
2008 Journal Article Coral reef habitats as surrogates of species, ecological functions and ecosystem services Conservation Biology Mumby PJ, Broad K, Brumbaugh DR, Dahlgren CP, Harborne AR, Hastings A, Holmes KE, Kappel CV, Micheli F, Sanchirico JN
2008 Newspaper Article Coral Reefs Under Rapid Climate Change and Ocean Acidification The Undersea Journal (PADI’s magazine for dive industry professionals) Christensen, T.R., Eakin, M., Hoegh-Guldberg, O. and Mumby, P.J.
2008 Book Remote sensing: The promise and the reality. In: Dennison, W.,(Ed.) Coastal Assessment Handbook, University of Maryland Press. In press. Phinn, S.R., Stumpf, R., and Roelfsema, C.M.
2008 Journal Article An Examination of Variability in Vertical Radiometric Profiles in a Coral Reef Environment Journal of Coastal Research Holden, H., E. LeDrew
2007  Journal Article Photo-library method for mapping seagrass biomass. Estuarine, Coastal and Shelf Science v.75 (4) 559-563 Kutser, T., Vahtmäe, E. Roelfsema, C.M. and Metsamaa, L.
2007 Conference Paper Mapping benthic habitats on Fijian coral reefs: Evaluating combined field and remote sensing approaches. TS9.5. Proceedings of Asian Conference on Remote Sensing, Kuala Lumpur, Malaysia, 12-16 November 2007. Roelfsema, C.M., S.R. Phinn, and Comley, J.
2007 Conference Paper Mapping benthic habitats on Fijian coral reefs: Integrating field and remote sensing approaches. GeoHab 2007: Marine Benthic Habitats of the Pacific and Other Oceans: Status, Use, and Management. Noumea, New Caledonia, May 2-6. Roelfsema, C.M., Phinn, S.R., and Zann, L.
2007 Conference Paper Mapping of tropical benthic habitats in Fiji: a study into integrated field and/or remote sensing approaches. GIS and Remote Sensing South Pacific User Conference, Suva, 26-29 November 2006 Roelfsema, C.M., Phinn, S.R. and Zann, L.
2007 Conference Paper Marine remote sensing toolkit for mapping and monitoring coastal environments. GIS and Remote Sensing South Pacific User Conference, Suva, 26-29 November 2006 Roelfsema, C.M., Phinn, S.R.. Dekker, A.E., Brando V. and Bell, A.
2007 Conference Paper Measuring structural complexity on coral reefs. Proceedings of American Acadamy of Underwater Sciences Knudby, A. and LeDrew, E.
2007 Journal Article Trophic cascade facilitates coral recruitment in a marine reserve. PNAS v.104(20)8362-8367 Mumby, P.J., Harborne, A.R., Williams, J., Kappel, C.V., Brumbaugh, D.R., Micheli, F., Holmes, K.E., Dahlgren, C.P., Paris, C.B. and Blackwell, P.G.
2007 Journal Article Progress in the use of remote sensing for coral reef biodiversity studies Progress in Physical Geography v.31:421-434 Knudby, A., LeDrew, E. and Newman, C.
2007 Journal Article Queensland researchers develop photo-mapping technique for benthic habitats. Position Magazine v.31 October-November Roelfsema, C.M. and Phinn, S.R
2007 Journal Article Monsoonal bloom of phytoplankton in Luzon Strait with MODIS data. Remote Sensing of Environment. v.109(4)443-450 Peñaflor, E.L. Villanoy, C.L., Liu, C.-T. and David, L.T.
2007 Product / Other Tutorial for coastal ocean remote sensing using Bilko 3.2. Presentation and Hands-on Tutorial Guide: The guide was developed, tested, and revised while conducting classes and workshops in remote sensing. It is currently being incorporated in workshops with local stakeholders for appreciation and implementation of RS-GIS in coastal management planning. David, L.T., Peñaflor, E., Salamante, E., Ticzon, V. and Canto, R.F.
2007 Conference Paper Integrating Satellite Image Data and Photo-Transects: Mapping Benthic Cover Types to Coral Reef Habitat Zones. Proceedings of GEOHAB 2007: Marine Benthic Habitats of the Pacific and Other Oceans: Status, Use, and Management. Noumea, New Caledonia, May 2-6. Phinn, S.R., Yang, S-Y., Roelfsema, C.M., Brady, K. and Mumby, P.J.
2007 Conference Paper Mapping Benthic Habitats on Fijian Coral Reefs: Integrating Field and Remote Sensing Approaches Proceedings of GEOHAB 2007: Marine Benthic Habitats of the Pacific and Other Oceans: Status, Use, and Management. Noumea, New Caledonia, May 2-6. Phinn, S.R., Yang, S-Y., Roelfsema, C.M., Brady, K., and Mumby, P.J.
2007 Conference Paper Measuring Structural Complexity on Coral Reefs Proceedings of American Acadamy of Underwater Sciences Knudby, A. and LeDrew, E.
2007 Electronic Resource (Web) The Coastal Remote Sensing Toolkit - Coral Reef Mapping sections www.gpa.uq.edu.au/CRSSIS/tools/rstoolkit/default.html www.gpa.uq.edu.au/CRSSIS/tools/rstoolkit/shallow-coral-bcm.html Phinn, S.R. and Roelfsema, C.M.
2007 Journal Article Coastal Aquatic Remote Sensing Applications for Environmental Monitoring and Management. Special Issue Editorial Journal of Applied Remote Sensing Brando, V.E. and Phinn, S.R.
2007 Product / Other Presentation and Hands-on Tutorial Guide: Tutorial for Coastal Ocean Remote Sensing using Bilko 3.2 The guide was developed, tested, and revised while conducting classes and workshops in remote sensing. It is currently being incorporated in workshops with local stakeholders for appreciation and implementation of RS-GIS in coastal management planning. Laura T. David, Eileen Peñaflor, Erlinda Salamante, Victor Ticzon, Robert Franklin Canto
2006 Conference Paper Evaluation of benthic survey techniques for validating maps of coral reefs derived from remotely sensed images. Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan, June 28-July 2, 2004. p1771-1780. Roelfsema, C.M., Joyce, K. E. and Phinn, S.R
2006 Conference Paper Mapping seagrass biomass with photo-library method. Proceedings of the 13th Australasian Remote Sensing and Photogrammetry Conference, Canberra, 11-16 November, CD-Rom, Causal Publications. Kutser, T., Vahtmäe, E. and Roelfsema, C.M.
2006 Conference Paper Towards an understanding of patterns in high spatial resolution satellite images of coral reefs. Eos Trans. American Geophysical Union. v.87(36) Ocean Sciences Meeting Supplement Abstract OS22N-02. [13th Ocean Sciences Meeting, February 20-24, Honolulu Convention Centre, Hawai’i.] Brady, K., Phinn, S.R., and Mumby, P.J
2006 Conference Paper Coastal zone remote sensing: understanding and managing dynamic and complex environments (a synthesis and toolkit?). Proceedings of the 13h Australasian Remote Sensing and Photogrammetry Conference, Canberra, 11-16 November, CD-Rom, Causal Publications. Phinn, S.
2006 Conference Paper Mud, algae or seagrass: An assessment of remote sensing techniques for mapping inter-tidal seagrass cover and composition in turbid tropical environments. Proceedings of the 13th Australasian Remote Sensing and Photogrammetry Conference, Canberra, 20-24 November, CD Rom, Causal Publications. Phinn, S., Hough, S., Roelfsema, C., Anstee, J., Dekker, A., Wettle, M. and Daniels
2006 Conference Paper Mapping seagrass (species composition, cover and above-ground biomass): a multi-sensor evaluation in Moreton Bay, Australia. Eos Trans. American Geophysical Union. v.87(36) Ocean Sciences Meeting Supplement Abstract. [13th Ocean Sciences Meeting, February 20-24, Honolulu Convention Centre, Hawai’i.] Phinn, S.R., Roelfsema, C.M. Dekker, A.G., Brando, V., Anstee, J. and Wettle, M.
2006 Conference Paper Assessing the effects of multi spectral image processing and field validation survey approaches on the accuracy of seagrass maps in Moreton Bay Australia. Proceedings of the 13th Ocean Sciences Meeting, February 20-24, Honolulu Convention Centre, Hawai’i. Roelfsema, C.M., Dekker, A.G., Brando, V., Anstee, J. and Wettle, M.
0 Journal Article Thermal Stress Pattern in the Coral Triangle   Eileen L. Peñaflor, William Skirving, Laura T. David
0 Journal Article Automated Subsurface Coral Cover Counting with Area Calibration   Ma. Sheila Angeli Marcos, Laura T. David, Maricor Soriano
0 Journal Article Utilizing Acoustic Data in Establishing a Relationship between Microhabitat Characteristics and Reef Fish Abundance   Victor Ticzon, Badi R. Samaniego, Greg Foster, Sonia Bejerano-Chavarro, Peter Mumby, Laura T. David
0 Journal Article Temporal and Spatial Thermal Complexity of Philippine Waters   Zolah Botin, Ric del Rosario, Lael Perrot, Laura T. David
0 Journal Article Assessing the effect of management zonation on live coral cover using multi-date IKONOS satellite imagery Journal of Applied Remote Sensing Newman, C.M., A.J. Knudby, E. LeDrew
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Restoration & Remediation ******

Year Publicaton Type Name of Article Publication Authors
2009 Product / Other Konsep & Panduan Restorasi Terumbu: Membuat pilihan bijak di antara ketidakpastian. [Indonesian translation of Reef Restoration Concepts and Guidelines] Coral Reef Targeted Research & Capacity Building for Management Program. St Lucia, Australia. Edwards, A.J. and Gomez, E.D.
2008 Book The underwater silviculture approach for reef restoration: an emergent aquaculture theme. In Schwartz, Stephen H. (ed) Aquaculture Research Trends. Nova Science Publishers Inc, New York. 338p. Shafir, S.and Rinkevich, B.
2008 Conference Paper Coral transplantation in a degraded lagoon environment: differential results of three species. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-3] Gomez, E., Cabaitan, P. and Yap, H.
2008 Conference Paper Effects of coral transplantation and giant clam restocking on the functional groups of fish on degraded patch reefs. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-44] Cabaitan, P., Gomez, E. and Alino, P.
2008 Conference Paper Gardening Coral Reefs – New insights for coral reef restoration by using branching corals as ecosystem engineering species. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-2] Horoszowski, Y., Brethes, J.-C. and Rinkevich, B.
2008 Conference Paper How Quickly Do Coral-Fragments of Different Species ‘Self-Attach’ After Transplantation? 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-5] Guest, J., Dizon, R., Franco, C., Edwards, A. and Gomez, E.
2008 Conference Paper Survival, Growth, and Fecundity of Acropora muricata and Hydnophora rigida After Fragmentation and Transplantation. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-7] Vicentuan, K., Guest, J., Aliño, P. and Heyward, A.
2008 Conference Paper Species Specific Sensitivities of Transplanted Coral Fragments from Eleven Species to Predation and Bleaching. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-10] Dizon, R., Guest, J., Gomez, E. and Edwards, A.
2008 Conference Paper Implementing Acropora spp. larval settlement techniques and a coral hatchery system to gain insights into the survivorship of juvenile Acropora spp. polyps. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-23] Boch, C. and Morse, A.
2008 Conference Paper Comparisons between directly transplanted and nursery-reared coral fragments in Bolinao, Northwestern Philippines. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-26] Dela Cruz, D., Rinkevich, B., Gomez, E. and Yap, H.
2008 Conference Paper Natural and enhanced coral reef recovery after injury. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-46] Moulding, A., Gilliam, D., Kosmynin, V. and Dodge, R.
2008 Conference Paper Mass culture of reef building corals in open water at Akajima Marine Science Laboratory. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24-21] Omori, M., Iwao, K., Taniguchi, H. and Tamura, M.
2008 Conference Paper Predicting patterns of coral spawning at multiple scales. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [11-20] Baird, A. and Guest, J.
2008 Conference Paper Recruitment of corals on standardized artificial substrata at two Indo-West Pacific locations 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24.1121] Bollozos, I.S., Villanueva, R.and Edwards, A.
2008 Conference Paper Spawning patterns of corals in Northwestern Philippines. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [11.390] Vicentuan, K., Guest, J., Baria, M.V., Cabaitan, P., Dizon, R., Villanueva, R., Aliño, P., Edwards, A., Gomez, E. and Heyward, A.
2008 Conference Paper A global assessment of the threat of extinction for reef-building corals. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [18-49] Carpenter, K., Abrar, M., Aeby, G., Aronson, R., Banks, S., Bruckner, A., Chiriboga, A., Cortés, J., Delbeek, J., DeVantier, L., Edgar, G., Edwards, A., Fenner, D., Guzmán, H., Hoeksema, B., Hodgson, G., Johan, O., Licuanan, W., Livingstone, S., Lovell, E., Moore, J., Obura, D., Ochavillo, D., Polidoro, B., Precht, W., Quibilan, M., Reboton, C., Richards, Z., Rogers, A., Sanciangco, J., Sheppard, A., Sheppard, C., Smith, J., Stuart, S., Turak, E., Weil, E., Wood, E. and Zebrowski, D.
2008 Conference Paper Spatio-temporal patterns of coral recruitment in the Bolinao-Anda reef complex, Northwestern Philippines. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [10.295] Baria, M.V., Aliño, P., Guest, J. and Heyward, A.
2008 Conference Paper Coral reef restoration through the two stepped “coral gardening” concept. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24.1046] Levy, G.
2008 Conference Paper Mass culture of Acropora corals from eggs and larvae in the Republic of Palau. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24.1051] Omori, M., Watanabe, K., Tamura, M., Taniguchi, H. and Kimura, T.
2008 Conference Paper Coral reef restoration: standardized module intervention and monitoring program in Mexico, preliminary results. 11th International Coral Reef Symposium Abstracts [Online] http://www.nova.edu/ncri/11icrs/11icrs_abstractbook_final.pdf [24.1114] Kilfoyle, K., Rangel, M.A., Dodge, R.E. and Spieler, R.E.
2008 Journal Article Multi-species spawning of corals in north-western Philippines. Coral Reefs. v.27(1)83 Vicentuan, K.C., Guest, J.R., Baria, M.V., Cabaitan, P.C., Dizon, R.M., Villanueva, R.D., Aliño, P.M., Edwards, A.J., Gomez, E.D. and Heyward, A.J.
2008 Journal Article Comparison of three types of adhesives in attaching coral transplants to clam shell substrates. Aquatic Conservation: Marine and Freshwater Ecosystems v.18(7)1140-1148 Dizon, R.M., Edwards, A.J. and Gomez, E.D. 
2008 Journal Article Fixed and suspended coral nurseries in the Philippines: Establishing the first step in the “gardening concept” of reef restoration Journal of Experimental Marine Biology and Ecology v.358(1)86-97 Shaish, L., Levy, G., Gomez, E. and Rinkevich, B.
2008 Journal Article Coral kin aggregations exhibit mixed allogeneic reactions and enhanced fitness during early ontogeny. BMC Evolutionary Biology. v.8:126 Amar, K.O., Chadwick, N.E. and Rinkevich, B.
2008 Journal Article A Drupella cornus outbreak in the northern Gulf of Eilat and changes in coral prey. Coral Reefs. v.27(2)379 Shafir, S., Gur, O.and Rinkevich, B.
2008 Journal Article Employing of the amplified fragment length polymorphism (AFLP) methodology as an efficient population genetic tool for symbiotic cnidarians. Marine Biotechnology. v.10(4)350-357 Amar, K.O., Douek, J., Rabinowitz, C. and Rinkevich, B.
2008 Journal Article Management of coral reefs: We have gone wrong when neglecting active reef restoration. Marine Pollution Bulletin. v.56(11)1821-1824. Rinkevich, B.
2008 Journal Article One-third of reef-building corals face elevated extinction risk from climate change and local impacts. Science. v.321 (5888) 560-563 Carpenter, K., Abrar, M,. Aeby, G., Aronson, R., Banks, S., Bruckner, A., Chiriboga, A., Cortés, J., Delbeek, J., DeVantier, L., Edgar, G., Edwards, A., Fenner, D, Guzmán, H., Hoeksema, B., Hodgson, G., Johan, O., Licuanan, W., Livingstone, S., Lovell, E., Moore, J., Obura, D., Ochavillo, D., Polidoro, B., Precht, W., Quibilan, M., Reboton, C., Richards, Z., Rogers, A., Sanciangco, J., Sheppard, A., Sheppard, C., Smith, J., Stuart, S., Turak, E., Weil, E., Wood, E. and Zebrowski, D.
2008 Journal Article Growth of transplanted Acropora tenuis 2 years after egg culture Coral Reefs. v.27(1)165 Omori, M., Iwao, K. and Tamura, M.
2008 Journal Article Effects of coral transplantation and giant clam restocking on the structure of fish communities on degraded patch reef Journal of Experimental Marine Biology and Ecology. v.357(1)85-98 Cabaitan, P.C., Gomez, E.D. and Aliño, P.M.
2008 Product / Other Restauration Récifale Concepts & Recommandations : Faire des choix raisonnés de gestion dans un environnement indécis. [French translation of Reef Restoration Concepts and Guidelines] Coral Reef Targeted Research & Capacity Building for Management Program. St Lucia, Australia. Edwards, A.J. and Gomez, E.D.
2007 Book Observed spawning records of 82 coral species in Palau. In Kayanne H. et al. (eds) Coral Reefs of Palau. PICRC, Palau and JICA, Tokyo Omori, M.
2007 Journal Article Can dynamite-blasted reefs recover? A novel, low-tech approach to stimulating natural recovery in fish and coral populations. Marine Pollution Bulletin v.54:1009-1019. Raymundo, L.J., Maypa, A.P., Gomez, E.D. and Cadiz, P. 
2007 Journal Article How plastic can phenotypic plasticity be? The branching coral Stylophora pistillata as a model system. PLoS ONE. v.2(7)e644. Shaish, L., Abelson, A. and Rinkevich, B.
2007 Journal Article A floating mid-water coral nursery as larval dispersion hub: testing an idea. Marine Biology. v.151(2)713-718. Amar, K.O. and Rinkevich, B.
2007 Product / Other Reef Restoration Concepts and Guidelines: making sensible management choices in the face of uncertainty. Coral Reef Targeted Research & Capacity Building for Management Program: St Lucia, Australia. Edwards, A.J. and Gomez, E.D.
2006 Book The coral gardening concept and the use of underwater nurseries: lessons learned from silvics and silviculture. Chapter 16. In Precht, William F (ed). Coral Reef Restoration Handbook. CRC Press. 363p. Rinkevich, B.
2006 Conference Paper A mid-water coral nursery. Proceedings of 10th International Coral Reef Symposium, Okinawa, Japan, June 28-July 2, 2004. p1674-1679. Shafir, S., van Rijn, J.and Rinkevich, B.
2006 Journal Article Branch to colony trajectory in a modular organism: pattern formation in the Indo-Pacific coral Stylophora pistillata. Developmental Dynamics v.235:2111-2121. Shaish, L., Abelson, A.and Rinkevich, B.
2006 Journal Article Steps in the construction of underwater coral nursery, an essential component in reef restoration acts. Marine Biology. v.149(3)679-687. Shafir, S., van Rijn, J. and Rinkevich, B.
2006 Journal Article Coral nubbins as source material for coral biological research: A prospectus. Aquaculture. v.259(1-4)444-448. Shafir, S., van Rijn, J. and Rinkevich, B.
2006 Electronic Resource (Web) Restoration project at Half Moon Bay. CEA Electronic Communications, Edition 46. Akumal, Mexico. Centro Ecologico Akumal. http://www.ceakumal.org/cea_electronic_communications_edition_46.html  
2006 Electronic Resource (Web) Oceanographic student and professor deploy artificial reef modules in Mexico. Sharkbytes. An online newsletter from Nova Southeastern University. http://www.nova.edu/cwis/pubaffairs/sharkbytes/2006/nov22/oceanographic.html  
 
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